Calcium in PDB 9jtu: Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side)

All present enzymatic activity of Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side):
2.3.2.27;

The structure of Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side) also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side) (pdb code 9jtu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side), PDB code: 9jtu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1101 b:35.3 occ:1.00 OD1 A:ASP600 2.5 53.0 1.0 OD2 A:ASP600 2.9 53.0 1.0 CG A:ASP600 2.9 53.0 1.0 O3' F:DG30 3.4 52.0 1.0 OE2 A:GLU962 3.7 56.4 1.0 O A:GLY601 3.7 51.4 1.0 CB A:ASP600 4.2 53.0 1.0 NE2 A:HIS795 4.5 57.2 1.0 CD A:GLU962 4.6 56.4 1.0 OE1 A:GLU962 4.6 56.4 1.0 C A:GLY601 4.7 51.4 1.0 OP1 F:DG30 4.7 52.0 1.0 C3' F:DG30 4.7 52.0 1.0 CE1 A:HIS795 4.7 57.2 1.0 N A:GLY601 4.8 51.4 1.0

Calcium binding site 2 out of 2 in the Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryoem Structure of Mouse Rag Sec-1DNA (23RSS Side) within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca1101 b:57.1 occ:1.00 OD2 C:ASP600 2.5 53.7 1.0 O3' G:DG41 3.2 52.4 1.0 CG C:ASP600 3.3 53.7 1.0 OD1 C:ASP600 3.4 53.7 1.0 OE2 C:GLU962 3.4 54.0 1.0 O C:GLY601 3.5 51.6 1.0 O3' I:DG16 3.8 72.5 0.8 C4' G:DG41 3.9 52.4 1.0 OE1 C:GLU962 4.0 54.0 1.0 C3' G:DG41 4.1 52.4 1.0 CD C:GLU962 4.1 54.0 1.0 O5' G:DG41 4.5 52.4 1.0 C5' G:DG41 4.7 52.4 1.0 C C:GLY601 4.7 51.6 1.0 CB C:ASP600 4.7 53.7 1.0 NE2 C:HIS795 4.8 56.3 1.0 OD2 C:ASP708 4.8 62.0 1.0 CE1 C:HIS795 4.9 56.3 1.0 O4' G:DG41 5.0 52.4 1.0

X.Chen, L.Yao, W.Yang, M.Gellert. Cryoem Structure of Mouse Rag Sec-23DNA To Be Published.