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Calcium in PDB 9l44: Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1

Enzymatic activity of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1

All present enzymatic activity of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1:
3.2.1.18;

Calcium Binding Sites:

The binding sites of Calcium atom in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 (pdb code 9l44). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1, PDB code: 9l44:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 9l44

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Calcium binding site 1 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca504

b:30.0
occ:1.00
 O A:GLY298 1.9 41.6 1.0
O A:GLY342 2.1 43.3 1.0
O A:TYR344 2.5 45.0 1.0
O A:ASP294 2.5 38.7 1.0
OD2 A:ASP324 2.8 37.6 1.0
C A:GLY298 3.2 41.6 1.0
C A:GLY342 3.3 43.3 1.0
C A:ASP294 3.7 38.7 1.0
C A:TYR344 3.7 45.0 1.0
CG A:ASP324 3.8 37.6 1.0
CA A:GLY342 4.0 43.3 1.0
N A:GLY298 4.0 41.6 1.0
CA A:GLY298 4.0 41.6 1.0
N A:SER299 4.1 41.2 1.0
CA A:SER299 4.3 41.2 1.0
C A:ALA343 4.3 42.3 1.0
N A:TYR344 4.3 45.0 1.0
N A:ALA343 4.4 42.3 1.0
CA A:GLY345 4.4 37.9 1.0
CA A:ASN295 4.4 39.4 1.0
CB A:ASP324 4.5 37.6 1.0
N A:ASN295 4.5 39.4 1.0
OD1 A:ASP324 4.5 37.6 1.0
N A:GLY345 4.6 37.9 1.0
CA A:ALA343 4.6 42.3 1.0
O A:ALA343 4.6 42.3 1.0
CA A:TYR344 4.7 45.0 1.0
CA A:ASP294 4.7 38.7 1.0
CB A:ASP294 4.8 38.7 1.0
O A:ASN341 4.8 43.1 1.0
C A:ASN295 4.9 39.4 1.0

Calcium binding site 2 out of 8 in 9l44

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Calcium binding site 2 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca505

b:30.0
occ:1.00
 OD1 A:ASN378 2.1 39.3 1.0
OD1 A:ASP384 2.1 48.5 1.0
OD1 A:ASP376 2.3 37.6 1.0
O A:SER386 2.9 47.0 1.0
OD2 A:ASP376 2.9 37.6 1.0
CG A:ASP376 2.9 37.6 1.0
CG A:ASP384 3.1 48.5 1.0
CG A:ASN378 3.2 39.3 1.0
OD2 A:ASP384 3.5 48.5 1.0
OG A:SER386 3.6 47.0 1.0
ND2 A:ASN378 3.7 39.3 1.0
C A:SER386 4.0 47.0 1.0
N A:SER386 4.2 47.0 1.0
N A:ASN378 4.4 39.3 1.0
O A:ASP384 4.4 48.5 1.0
CB A:ASP376 4.4 37.6 1.0
CB A:ASP384 4.4 48.5 1.0
CB A:ASN378 4.5 39.3 1.0
C A:ASN378 4.5 39.3 1.0
CA A:SER386 4.5 47.0 1.0
C A:ASP384 4.6 48.5 1.0
O A:ASN378 4.6 39.3 1.0
CB A:SER386 4.6 47.0 1.0
CA A:ASN378 4.7 39.3 1.0
N A:GLY379 4.8 38.3 1.0
CA A:ASP384 4.9 48.5 1.0

Calcium binding site 3 out of 8 in 9l44

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Calcium binding site 3 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca504

b:30.0
occ:1.00
 O B:TYR344 1.9 39.3 1.0
O B:GLY298 1.9 38.9 1.0
O B:GLY342 2.5 40.6 1.0
OD2 B:ASP324 2.5 35.6 1.0
O B:ASP294 2.6 36.1 1.0
C B:TYR344 3.1 39.3 1.0
C B:GLY298 3.2 38.9 1.0
CG B:ASP324 3.4 35.6 1.0
C B:GLY342 3.6 40.6 1.0
N B:TYR344 3.7 39.3 1.0
C B:ASP294 3.8 36.1 1.0
N B:GLY345 4.0 34.2 1.0
CA B:GLY345 4.0 34.2 1.0
N B:SER299 4.0 38.9 1.0
CA B:SER299 4.1 38.9 1.0
CA B:TYR344 4.1 39.3 1.0
CA B:GLY342 4.1 40.6 1.0
CA B:GLY298 4.1 38.9 1.0
CB B:ASP324 4.2 35.6 1.0
N B:GLY298 4.2 38.9 1.0
OD1 B:ASP324 4.2 35.6 1.0
N B:ALA343 4.6 39.2 1.0
CA B:ASN295 4.6 36.5 1.0
N B:ASN295 4.7 36.5 1.0
CA B:ASP294 4.8 36.1 1.0
C B:ALA343 4.8 39.2 1.0
CB B:ASP294 4.8 36.1 1.0
O B:ASN341 4.8 42.7 1.0
O B:PRO326 4.9 36.3 1.0
N B:ASP294 5.0 36.1 1.0

Calcium binding site 4 out of 8 in 9l44

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Calcium binding site 4 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca505

b:30.0
occ:1.00
 OD1 B:ASN378 1.9 38.7 1.0
OD1 B:ASP384 2.1 48.9 1.0
OD1 B:ASP376 2.3 37.1 1.0
OD2 B:ASP376 2.9 37.1 1.0
CG B:ASP376 3.0 37.1 1.0
CG B:ASN378 3.0 38.7 1.0
CG B:ASP384 3.1 48.9 1.0
O B:SER386 3.3 46.6 1.0
OD2 B:ASP384 3.4 48.9 1.0
ND2 B:ASN378 3.6 38.7 1.0
OG B:SER386 4.0 46.6 1.0
N B:SER386 4.2 46.6 1.0
CB B:ASN378 4.3 38.7 1.0
N B:ASN378 4.3 38.7 1.0
C B:ASN378 4.3 38.7 1.0
C B:SER386 4.4 46.6 1.0
O B:ASN378 4.4 38.7 1.0
CB B:ASP384 4.4 48.9 1.0
O B:ASP384 4.5 48.9 1.0
CB B:ASP376 4.5 37.1 1.0
CA B:ASN378 4.5 38.7 1.0
C B:ASP384 4.6 48.9 1.0
N B:GLY379 4.7 39.0 1.0
CA B:SER386 4.7 46.6 1.0
CA B:GLY379 4.9 39.0 1.0
CB B:SER386 4.9 46.6 1.0
CA B:ASP384 4.9 48.9 1.0
N B:SER385 5.0 48.2 1.0

Calcium binding site 5 out of 8 in 9l44

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Calcium binding site 5 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca504

b:30.0
occ:1.00
 O C:GLY298 1.8 45.0 1.0
O C:TYR344 2.0 47.6 1.0
O C:GLY342 2.3 47.6 1.0
O C:ASP294 2.6 41.7 1.0
OD2 C:ASP324 2.7 42.5 1.0
C C:GLY298 3.0 45.0 1.0
C C:TYR344 3.2 47.6 1.0
C C:GLY342 3.4 47.6 1.0
CG C:ASP324 3.6 42.5 1.0
N C:TYR344 3.7 47.6 1.0
C C:ASP294 3.8 41.7 1.0
N C:SER299 3.9 45.5 1.0
CA C:GLY298 4.0 45.0 1.0
CA C:GLY342 4.0 47.6 1.0
N C:GLY298 4.0 45.0 1.0
CA C:SER299 4.1 45.5 1.0
N C:GLY345 4.1 40.7 1.0
CA C:TYR344 4.2 47.6 1.0
CA C:GLY345 4.2 40.7 1.0
CB C:ASP324 4.3 42.5 1.0
OD1 C:ASP324 4.4 42.5 1.0
N C:ALA343 4.5 46.9 1.0
CA C:ASN295 4.6 43.1 1.0
N C:ASN295 4.6 43.1 1.0
CA C:ASP294 4.7 41.7 1.0
CB C:ASP294 4.8 41.7 1.0
C C:ALA343 4.8 46.9 1.0
O C:ASN341 4.8 48.3 1.0
CA C:ALA343 4.9 46.9 1.0
O C:PRO326 5.0 40.7 1.0

Calcium binding site 6 out of 8 in 9l44

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Calcium binding site 6 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca505

b:30.0
occ:1.00
 OD1 C:ASP384 2.2 51.8 1.0
OD1 C:ASP376 2.3 41.7 1.0
OD1 C:ASN378 2.3 43.6 1.0
O C:SER386 2.6 49.7 1.0
OD2 C:ASP376 2.9 41.7 1.0
CG C:ASP376 2.9 41.7 1.0
CG C:ASP384 3.1 51.8 1.0
CG C:ASN378 3.3 43.6 1.0
OD2 C:ASP384 3.5 51.8 1.0
OG C:SER386 3.7 49.7 1.0
C C:SER386 3.8 49.7 1.0
ND2 C:ASN378 3.8 43.6 1.0
N C:SER386 3.9 49.7 1.0
CA C:SER386 4.3 49.7 1.0
CB C:ASP376 4.4 41.7 1.0
O C:ASP384 4.4 51.8 1.0
CB C:ASP384 4.4 51.8 1.0
C C:ASP384 4.5 51.8 1.0
N C:ASN378 4.5 43.6 1.0
CB C:ASN378 4.6 43.6 1.0
CB C:SER386 4.7 49.7 1.0
C C:ASN378 4.7 43.6 1.0
O C:ASN378 4.8 43.6 1.0
CA C:ASN378 4.9 43.6 1.0
N C:PHE387 4.9 44.7 1.0
N C:SER385 4.9 52.0 1.0
N C:GLY379 5.0 42.7 1.0
CA C:ASP384 5.0 51.8 1.0
C C:SER385 5.0 52.0 1.0

Calcium binding site 7 out of 8 in 9l44

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Calcium binding site 7 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca504

b:30.0
occ:1.00
 O D:GLY298 2.1 44.1 1.0
O D:TYR344 2.3 42.0 1.0
OD2 D:ASP324 2.5 40.1 1.0
O D:ASP294 2.7 40.0 1.0
C D:GLY298 3.3 44.1 1.0
CG D:ASP324 3.4 40.1 1.0
C D:TYR344 3.5 42.0 1.0
O D:GLY342 3.7 45.1 1.0
C D:GLY342 3.8 45.1 1.0
C D:ASP294 3.9 40.0 1.0
N D:TYR344 4.0 42.0 1.0
CA D:GLY342 4.0 45.1 1.0
N D:SER299 4.1 44.0 1.0
CB D:ASP324 4.2 40.1 1.0
CA D:SER299 4.2 44.0 1.0
OD1 D:ASP324 4.2 40.1 1.0
CA D:GLY298 4.3 44.1 1.0
CA D:GLY345 4.3 36.7 1.0
N D:GLY298 4.3 44.1 1.0
N D:GLY345 4.4 36.7 1.0
N D:ALA343 4.4 42.1 1.0
CA D:TYR344 4.4 42.0 1.0
CA D:ASN295 4.7 39.9 1.0
N D:ASN295 4.7 39.9 1.0
O D:ASN341 4.8 48.8 1.0
O D:PRO326 4.8 39.9 1.0
C D:ALA343 4.9 42.1 1.0
CA D:ASP294 4.9 40.0 1.0
CB D:ASP294 5.0 40.0 1.0

Calcium binding site 8 out of 8 in 9l44

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Calcium binding site 8 out of 8 in the Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca505

b:30.0
occ:1.00
 OD1 D:ASP376 2.0 40.9 1.0
OD1 D:ASP384 2.3 54.1 1.0
OD2 D:ASP376 2.4 40.9 1.0
OD1 D:ASN378 2.4 44.5 1.0
CG D:ASP376 2.5 40.9 1.0
O D:SER386 2.6 49.4 1.0
O D:ASP384 3.3 54.1 1.0
CG D:ASP384 3.4 54.1 1.0
CG D:ASN378 3.6 44.5 1.0
C D:SER386 3.8 49.4 1.0
N D:SER386 4.0 49.4 1.0
OD2 D:ASP384 4.0 54.1 1.0
CB D:ASP376 4.0 40.9 1.0
C D:ASP384 4.1 54.1 1.0
ND2 D:ASN378 4.2 44.5 1.0
OG D:SER386 4.2 49.4 1.0
CA D:SER386 4.4 49.4 1.0
CB D:ASP384 4.5 54.1 1.0
N D:ASN378 4.5 44.5 1.0
C D:ASN378 4.6 44.5 1.0
O D:ASN378 4.7 44.5 1.0
CA D:ASP376 4.7 40.9 1.0
CA D:ASP384 4.7 54.1 1.0
N D:GLY379 4.7 43.0 1.0
CB D:ASN378 4.8 44.5 1.0
C D:SER385 4.8 51.9 1.0
CB D:SER386 4.8 49.4 1.0
N D:PHE387 4.8 42.9 1.0
CA D:ASN378 4.9 44.5 1.0
CA D:GLY379 4.9 43.0 1.0
N D:SER385 4.9 51.9 1.0
C D:ASP376 4.9 40.9 1.0
N D:ASP384 5.0 54.1 1.0

Reference:

X.Wang, J.Ge, X.Li. Neuraminidase of A/Dairy Cow/Minnesota/24_016288-003/2024 H5N1 To Be Published.
Page generated: Mon Aug 4 18:55:28 2025

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