Calcium in PDB 9myj: Structure of P. Gingivalis Pork and Porn Complexes From Cryo Electron Microscopy

The binding sites of Calcium atom in the Structure of P. Gingivalis Pork and Porn Complexes From Cryo Electron Microscopy (pdb code 9myj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of P. Gingivalis Pork and Porn Complexes From Cryo Electron Microscopy, PDB code: 9myj:

Calcium binding site 1 out of 1 in the Structure of P. Gingivalis Pork and Porn Complexes From Cryo Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of P. Gingivalis Pork and Porn Complexes From Cryo Electron Microscopy within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:51.1 occ:1.00 OD2 B:ASP371 2.3 50.1 1.0 O B:HIS373 2.5 46.2 1.0 OD1 B:ASP371 2.6 50.1 1.0 O B:PHE361 2.6 46.9 1.0 O B:TYR368 2.7 43.3 1.0 CG B:ASP371 2.8 50.1 1.0 C B:ASN360 3.1 48.4 1.0 O B:ASN360 3.3 48.4 1.0 CA B:ASN360 3.4 48.4 1.0 CB B:ASN360 3.4 48.4 1.0 N B:PHE361 3.6 46.9 1.0 C B:PHE361 3.6 46.9 1.0 C B:HIS373 3.7 46.2 1.0 C B:TYR368 4.0 43.3 1.0 CA B:PHE361 4.2 46.9 1.0 CB B:ASP371 4.2 50.1 1.0 N B:HIS373 4.4 46.2 1.0 CA B:HIS373 4.5 46.2 1.0 CG B:ASN360 4.6 48.4 1.0 N B:LEU374 4.7 46.8 1.0 CD B:PRO363 4.7 49.2 1.0 CB B:HIS373 4.7 46.2 1.0 O B:LEU374 4.7 46.8 1.0 N B:LYS362 4.7 46.8 1.0 ND2 B:ASN360 4.7 48.4 1.0 N B:ASN360 4.8 48.4 1.0 CA B:TYR368 4.8 43.3 1.0 CB B:TRP441 4.8 40.7 1.0 CA B:LEU374 4.8 46.8 1.0 CA B:THR369 4.9 45.6 1.0 N B:THR369 4.9 45.6 1.0 O B:TRP441 4.9 40.7 1.0

D.Gorasia, E.Hanssen, M.Mudaliyar, C.Morton, S.Valimehr, C.Seers, L.Zhang, D.Ghosal, P.Veith, E.Reynolds. Near-Atomic Structure of the Porkn Rings, Disulfide Bonded to Porg and Bound to Attachment Complexes, Provide Mechanistic Insights Into the Type IX Secretion System Biorxiv 2025.
ISSN: ISSN 2692-8205
DOI: 10.1101/2025.03.18.644022