Calcium in PDB 9nb9: Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei

Enzymatic activity of Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei

All present enzymatic activity of Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei:
3.1.21.1; 3.1.3.16;

Other elements in 9nb9:

The structure of Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei (pdb code 9nb9). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei, PDB code: 9nb9:

Calcium binding site 1 out of 1 in 9nb9

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Calcium Binding Sites List in 9nb9

Calcium binding site 1 out of 1 in the Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei

Mono view

Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Viral Protein DP71L in Complex with Phosphorylated EIF2ALPHA (Ntd) and Protein Phosphatase 1A (D64A), Stabilized By G-Actin/Dnasei within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
D:Ca401 b:15.2 occ:1.00	O2B	D:ATP402	2.3	6.8	1.0
	OE1	D:GLN139	2.4	15.3	1.0
	O3G	D:ATP402	2.4	13.1	1.0
	CD	D:GLN139	3.5	16.2	1.0
	PG	D:ATP402	3.6	9.1	1.0
	PB	D:ATP402	3.6	1.1	1.0
	O1G	D:ATP402	3.9	10.6	1.0
	O1A	D:ATP402	4.0	5.5	1.0
	O3B	D:ATP402	4.0	7.6	1.0
	OD2	D:ASP13	4.1	17.7	1.0
	NE2	D:GLN139	4.3	17.9	1.0
	NZ	D:LYS20	4.3	13.4	1.0
	OD1	D:ASP13	4.5	15.5	1.0
	O3A	D:ATP402	4.5	8.3	1.0
	OD2	D:ASP156	4.6	18.7	1.0
	CG	D:GLN139	4.6	10.1	1.0
	CA	D:GLY15	4.6	15.0	1.0
	O1B	D:ATP402	4.7	11.0	1.0
	CG	D:ASP13	4.7	17.1	1.0
	PA	D:ATP402	4.8	6.0	1.0
	CG2	D:VAL341	4.9	10.6	1.0
	CB	D:GLN139	4.9	7.2	1.0
	O2G	D:ATP402	4.9	8.0	1.0

Reference:

L.C.Reineke, P.J.Zhu, U.Dalwadi, S.W.Dooling, Y.Liu, I.C.Wang, S.Young-Baird, J.Okoh, S.K.Kuncha, H.Zhou, A.Kannan, H.Park, N.A.Debeaubien, T.Croll, D.J.Lee, C.Arthur, T.E.Dever, P.Walter, J.Chen, A.Frost, M.Costa-Mattioli. Harnessing the Evolution of Proteostasis Networks to Reverse Cognitive Dysfunction. Biorxiv 2025.
ISSN: ISSN 2692-8205
PubMed: 40568171
DOI: 10.1101/2025.02.28.640897

Page generated: Mon Aug 4 19:00:27 2025

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