Calcium in PDB 9osm: [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium

The structure of [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium, PDB code: 9osm was solved by A.Horvath, S.Vecchioni, K.Woloszyn, Y.P.Ohayon, R.Sha, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.35 / 2.93
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	111.704, 111.704, 67.674, 90, 90, 120
R / Rfree (%)	22.9 / 29.1

The binding sites of Calcium atom in the [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium (pdb code 9osm). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium, PDB code: 9osm:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca101 b:66.0 occ:0.20 OP2 B:DA2 3.9 93.9 1.0 O6 B:DG3 4.0 124.5 1.0 N7 B:DG3 4.4 112.7 1.0 O5' B:DG1 4.6 92.0 1.0 N7 B:DA2 4.6 108.4 1.0 O4 C:DT12 4.8 134.3 1.0 C6 B:DG3 4.8 128.3 1.0 C5 B:DG3 5.0 119.9 1.0

Calcium binding site 2 out of 2 in the [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of [4,8,7-2] Shifted Tensegrity Triangle with An (Arm,Center,Arm) Distribution of (4,8,7) Base Pairs and 2 Nt Sticky Ends Complexing Calcium within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca101 b:93.2 occ:0.99 O4' D:DT19 4.1 90.3 1.0 C4' D:DT19 4.2 83.6 1.0 OP2 B:DG3 4.3 92.8 1.0 OP1 B:DA2 4.4 83.5 1.0 C2' D:DA18 4.5 89.9 1.0 C1' D:DA18 4.5 98.8 1.0 N2 D:DG17 4.5 99.1 1.0 C5' D:DT19 4.5 83.5 1.0 O4' C:DG8 4.7 110.5 1.0 O2 C:DC7 4.8 108.8 1.0 O5' B:DA2 4.8 87.9 1.0 N3 D:DA18 4.8 105.8 1.0 C4' C:DG8 4.9 108.3 1.0

A.Horvath, S.Vecchioni, K.Woloszyn, Y.P.Ohayon, R.Sha. Shifted Tensegrity Triangles To Be Published.