Calcium in PDB 1v3d: Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN

All present enzymatic activity of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN:
3.2.1.18;

The structure of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN, PDB code: 1v3d was solved by M.C.Lawrence, N.A.Borg, V.A.Streltsov, P.A.Pilling, V.C.Epa, J.N.Varghese, J.L.Mckimm-Breschkin, P.M.Colman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.39 / 2.28
Space group	P 62 2 2
Cell size a, b, c (Å), α, β, γ (°)	219.005, 219.005, 109.814, 90.00, 90.00, 120.00
R / Rfree (%)	21.3 / 27

The binding sites of Calcium atom in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN (pdb code 1v3d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN, PDB code: 1v3d:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:43.7 occ:1.00 O A:GLY284 2.3 36.7 1.0 O A:SER282 2.4 46.3 1.0 O A:ASP279 2.4 40.3 1.0 OD1 A:ASP279 2.5 44.9 1.0 O A:ALA316 2.5 28.6 1.0 OG A:SER282 2.9 51.8 1.0 C A:ASP279 3.4 40.7 1.0 C A:SER282 3.4 46.8 1.0 C A:GLY284 3.5 35.7 1.0 CG A:ASP279 3.7 40.2 1.0 C A:ALA316 3.7 27.4 1.0 CA A:ASP279 3.8 41.0 1.0 O A:PRO283 3.8 36.0 1.0 CB A:SER282 4.0 51.8 1.0 C A:PRO283 4.0 37.8 1.0 CA A:SER282 4.1 49.5 1.0 N A:GLY284 4.3 35.3 1.0 CB A:ASP279 4.3 40.6 1.0 CA A:ILE285 4.3 31.8 1.0 O A:HOH5462 4.4 47.3 1.0 N A:SER282 4.4 51.0 1.0 N A:PRO283 4.4 46.5 1.0 N A:ILE285 4.4 35.1 1.0 OE2 A:GLU286 4.4 54.4 1.0 CA A:GLY284 4.5 33.7 1.0 CA A:ALA316 4.5 25.8 1.0 N A:TYR280 4.6 38.7 1.0 OD2 A:ASP279 4.6 42.3 1.0 CA A:PRO283 4.6 42.8 1.0 O A:SER278 4.7 46.1 1.0 N A:ALA317 4.7 26.8 1.0 C A:ILE285 4.7 35.5 1.0 CA A:ALA317 4.9 25.2 1.0 N A:GLU286 4.9 35.7 1.0

Calcium binding site 2 out of 2 in the Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Hemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III: Complex with NEU5AC2EN within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca2001 b:37.6 occ:1.00 O B:HOH5278 2.1 42.6 1.0 O B:ASP279 2.3 33.0 1.0 O B:SER282 2.4 56.4 1.0 O B:ALA316 2.4 43.4 1.0 O B:GLY284 2.5 39.8 1.0 OD1 B:ASP279 2.7 47.8 1.0 OG B:SER282 3.0 50.7 1.0 C B:ASP279 3.3 38.8 1.0 CG B:ASP279 3.4 46.0 1.0 C B:SER282 3.5 54.7 1.0 C B:ALA316 3.6 43.3 1.0 C B:GLY284 3.7 42.7 1.0 CA B:ASP279 3.7 38.8 1.0 OD2 B:ASP279 4.0 51.9 1.0 CB B:SER282 4.1 51.0 1.0 CA B:SER282 4.1 51.8 1.0 CB B:ASP279 4.1 44.2 1.0 N B:SER282 4.2 48.6 1.0 O B:PRO283 4.2 53.0 1.0 C B:PRO283 4.3 53.1 1.0 CA B:ILE285 4.3 33.3 1.0 N B:TYR280 4.4 38.1 1.0 N B:ILE285 4.4 39.2 1.0 CA B:ALA316 4.5 42.8 1.0 N B:GLY284 4.5 50.9 1.0 O B:HOH5584 4.5 58.1 1.0 N B:PRO283 4.6 55.4 1.0 N B:ALA317 4.6 42.5 1.0 CA B:GLY284 4.7 47.0 1.0 CA B:ALA317 4.7 38.2 1.0 OE2 B:GLU286 4.8 55.6 1.0 CA B:PRO283 4.8 54.1 1.0 C B:ILE285 4.9 33.6 1.0 CA B:TYR280 4.9 41.8 1.0 CB B:ALA317 4.9 32.4 1.0 N B:GLU286 5.0 31.5 1.0

M.C.Lawrence, N.A.Borg, V.A.Streltsov, P.A.Pilling, V.C.Epa, J.N.Varghese, J.L.Mckimm-Breschkin, P.M.Colman. Structure of the Haemagglutinin-Neuraminidase From Human Parainfluenza Virus Type III J.Mol.Biol. V. 335 1343 2004.
ISSN: ISSN 0022-2836
PubMed: 14729348
DOI: 10.1016/J.JMB.2003.11.032