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Calcium in PDB 2bax: Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2

Enzymatic activity of Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2

All present enzymatic activity of Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2:
3.1.1.4;

Protein crystallography data

The structure of Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2, PDB code: 2bax was solved by K.Sekar, M.Yogavel, D.Velmurugan, Z.Dauter, M.Dauter, M.D.Tsai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 46.057, 46.057, 101.138, 90.00, 90.00, 120.00
R / Rfree (%) 11.9 / 15.6

Other elements in 2bax:

The structure of Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2 also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2 (pdb code 2bax). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2, PDB code: 2bax:

Calcium binding site 1 out of 1 in 2bax

Go back to Calcium Binding Sites List in 2bax
Calcium binding site 1 out of 1 in the Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Atomic Resolution Structure of the Double Mutant (K53,56M) of Bovine Pancreatic Phospholipase A2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca124

b:12.5
occ:1.00
 O A:GLY32 2.3 15.7 1.0
O A:GLY30 2.3 15.3 1.0
O A:HOH262 2.4 18.0 1.0
O A:TYR28 2.4 11.8 1.0
O A:HOH257 2.4 13.0 1.0
OD2 A:ASP49 2.5 12.8 1.0
OD1 A:ASP49 2.5 11.5 1.0
CG A:ASP49 2.8 11.3 1.0
C A:GLY32 3.5 16.7 1.0
C A:TYR28 3.5 11.4 1.0
C A:GLY30 3.6 16.9 1.0
N A:GLY32 3.9 22.3 1.0
N A:GLY30 3.9 13.6 1.0
CA A:GLY32 4.2 20.5 1.0
C A:LEU31 4.2 21.9 0.6
O A:HOH205 4.2 11.7 1.0
CA A:TYR28 4.2 10.7 1.0
O A:HOH300 4.3 23.9 0.3
C1 A:MRD132 4.3 41.3 0.6
C A:LEU31 4.3 22.3 0.4
CB A:ASP49 4.3 10.7 1.0
CA A:GLY30 4.3 15.0 1.0
O A:HOH214 4.4 14.6 1.0
N A:LEU31 4.5 21.2 0.4
N A:GLY33 4.5 18.3 0.4
N A:GLY33 4.5 17.4 0.6
N A:CYS29 4.5 11.2 1.0
N A:LEU31 4.6 21.3 0.6
O A:LEU31 4.6 23.2 0.6
O A:HOH325 4.6 56.8 0.8
CA A:LEU31 4.6 23.3 0.4
C A:CYS29 4.7 13.0 1.0
CB A:TYR28 4.7 10.7 1.0
CA A:CYS29 4.7 12.0 1.0
C5 A:MRD127 4.7 19.7 0.3
CA A:LEU31 4.7 23.1 0.6
O A:HOH237 4.7 24.0 1.0
CA A:GLY33 4.7 18.1 0.6
CA A:GLY33 4.8 20.9 0.4
O A:HOH300 4.8 26.3 0.7
O A:CYS45 4.9 9.8 1.0
O A:LEU31 4.9 26.5 0.4
O4 A:MRD127 4.9 17.9 0.3
O A:HOH333 5.0 41.4 1.0

Reference:

K.Sekar, V.Rajakannan, D.Gayathri, D.Velmurugan, M.J.Poi, M.Dauter, Z.Dauter, M.D.Tsai. Atomic Resolution (0.97 A) Structure of the Triple Mutant (K53,56,121M) of Bovine Pancreatic Phospholipase A2. Acta Crystallogr.,Sect.F V. 61 3 2005.
ISSN: ESSN 1744-3091
PubMed: 16508077
DOI: 10.1107/S1744309104021748
Page generated: Sat Dec 12 03:32:07 2020

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