Calcium in PDB 2bbn: Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr)
Calcium Binding Sites:
The binding sites of Calcium atom in the Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr)
(pdb code 2bbn). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the
Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr), PDB code: 2bbn:
Jump to Calcium binding site number:
1;
2;
3;
4;
Calcium binding site 1 out
of 4 in 2bbn
Go back to
Calcium Binding Sites List in 2bbn
Calcium binding site 1 out
of 4 in the Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca181
b:0.0
occ:1.00
|
HG2
|
A:GLU31
|
1.7
|
0.0
|
1.0
|
OE2
|
A:GLU31
|
1.7
|
0.0
|
1.0
|
OD1
|
A:ASP20
|
1.8
|
0.0
|
1.0
|
CD
|
A:GLU31
|
2.2
|
0.0
|
1.0
|
CG
|
A:GLU31
|
2.3
|
0.0
|
1.0
|
OD1
|
A:ASP24
|
2.4
|
0.0
|
1.0
|
CG
|
A:ASP20
|
2.6
|
0.0
|
1.0
|
OD2
|
A:ASP24
|
2.8
|
0.0
|
1.0
|
HG3
|
A:GLU31
|
2.9
|
0.0
|
1.0
|
CG
|
A:ASP24
|
2.9
|
0.0
|
1.0
|
HA
|
A:ASP20
|
3.1
|
0.0
|
1.0
|
HB2
|
A:ASP22
|
3.2
|
0.0
|
1.0
|
OD2
|
A:ASP20
|
3.2
|
0.0
|
1.0
|
H
|
A:THR26
|
3.3
|
0.0
|
1.0
|
OE1
|
A:GLU31
|
3.3
|
0.0
|
1.0
|
OD1
|
A:ASP22
|
3.3
|
0.0
|
1.0
|
O
|
A:THR26
|
3.3
|
0.0
|
1.0
|
H
|
A:GLY25
|
3.5
|
0.0
|
1.0
|
CB
|
A:GLU31
|
3.5
|
0.0
|
1.0
|
HB2
|
A:GLU31
|
3.6
|
0.0
|
1.0
|
CB
|
A:ASP20
|
3.7
|
0.0
|
1.0
|
H
|
A:ASP22
|
3.8
|
0.0
|
1.0
|
CA
|
A:ASP20
|
3.8
|
0.0
|
1.0
|
H
|
A:GLY23
|
3.9
|
0.0
|
1.0
|
HB3
|
A:GLU31
|
4.0
|
0.0
|
1.0
|
HE3
|
A:LYS30
|
4.0
|
0.0
|
1.0
|
CG
|
A:ASP22
|
4.1
|
0.0
|
1.0
|
CB
|
A:ASP22
|
4.1
|
0.0
|
1.0
|
HB2
|
A:ASP20
|
4.1
|
0.0
|
1.0
|
N
|
A:THR26
|
4.2
|
0.0
|
1.0
|
C
|
A:THR26
|
4.4
|
0.0
|
1.0
|
N
|
A:GLY25
|
4.4
|
0.0
|
1.0
|
CB
|
A:ASP24
|
4.4
|
0.0
|
1.0
|
H
|
A:ASP24
|
4.5
|
0.0
|
1.0
|
C
|
A:ASP20
|
4.5
|
0.0
|
1.0
|
HA
|
A:GLU31
|
4.6
|
0.0
|
1.0
|
N
|
A:ASP22
|
4.6
|
0.0
|
1.0
|
HB3
|
A:ASP20
|
4.6
|
0.0
|
1.0
|
OG1
|
A:THR26
|
4.7
|
0.0
|
1.0
|
H
|
A:THR28
|
4.7
|
0.0
|
1.0
|
CA
|
A:GLU31
|
4.7
|
0.0
|
1.0
|
H
|
A:LYS21
|
4.7
|
0.0
|
1.0
|
HB3
|
A:ASP22
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ASP24
|
4.8
|
0.0
|
1.0
|
N
|
A:GLY23
|
4.9
|
0.0
|
1.0
|
N
|
A:ASP24
|
4.9
|
0.0
|
1.0
|
N
|
A:LYS21
|
4.9
|
0.0
|
1.0
|
HA
|
A:ILE27
|
4.9
|
0.0
|
1.0
|
CA
|
A:THR26
|
4.9
|
0.0
|
1.0
|
HA2
|
A:GLY25
|
4.9
|
0.0
|
1.0
|
CA
|
A:ASP22
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 2 out
of 4 in 2bbn
Go back to
Calcium Binding Sites List in 2bbn
Calcium binding site 2 out
of 4 in the Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca182
b:0.0
occ:1.00
|
H
|
A:ASN60
|
1.5
|
0.0
|
1.0
|
HB2
|
A:ASN60
|
1.7
|
0.0
|
1.0
|
N
|
A:ASN60
|
2.4
|
0.0
|
1.0
|
H
|
A:GLY59
|
2.4
|
0.0
|
1.0
|
CB
|
A:ASN60
|
2.5
|
0.0
|
1.0
|
HB3
|
A:ASP58
|
2.6
|
0.0
|
1.0
|
CA
|
A:ASN60
|
2.9
|
0.0
|
1.0
|
OE1
|
A:GLU67
|
2.9
|
0.0
|
1.0
|
OE2
|
A:GLU67
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP56
|
3.0
|
0.0
|
1.0
|
CG
|
A:ASN60
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASN60
|
3.1
|
0.0
|
1.0
|
O
|
A:THR62
|
3.3
|
0.0
|
1.0
|
CD
|
A:GLU67
|
3.3
|
0.0
|
1.0
|
N
|
A:GLY59
|
3.3
|
0.0
|
1.0
|
OD2
|
A:ASP58
|
3.3
|
0.0
|
1.0
|
HB3
|
A:ASN60
|
3.4
|
0.0
|
1.0
|
C
|
A:GLY59
|
3.5
|
0.0
|
1.0
|
OD2
|
A:ASP56
|
3.6
|
0.0
|
1.0
|
H
|
A:THR62
|
3.6
|
0.0
|
1.0
|
CB
|
A:ASP58
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP56
|
3.6
|
0.0
|
1.0
|
C
|
A:ASN60
|
3.7
|
0.0
|
1.0
|
H
|
A:GLY61
|
3.7
|
0.0
|
1.0
|
HA
|
A:ASN60
|
3.8
|
0.0
|
1.0
|
CG
|
A:ASP58
|
3.9
|
0.0
|
1.0
|
CA
|
A:GLY59
|
3.9
|
0.0
|
1.0
|
N
|
A:GLY61
|
4.0
|
0.0
|
1.0
|
ND2
|
A:ASN60
|
4.1
|
0.0
|
1.0
|
HA
|
A:ILE63
|
4.1
|
0.0
|
1.0
|
HA2
|
A:GLY59
|
4.2
|
0.0
|
1.0
|
C
|
A:THR62
|
4.2
|
0.0
|
1.0
|
HB2
|
A:ASP58
|
4.3
|
0.0
|
1.0
|
C
|
A:ASP58
|
4.3
|
0.0
|
1.0
|
N
|
A:THR62
|
4.4
|
0.0
|
1.0
|
CA
|
A:ASP58
|
4.5
|
0.0
|
1.0
|
O
|
A:ASN60
|
4.5
|
0.0
|
1.0
|
HD21
|
A:ASN60
|
4.5
|
0.0
|
1.0
|
H
|
A:ASP58
|
4.5
|
0.0
|
1.0
|
O
|
A:GLY59
|
4.5
|
0.0
|
1.0
|
CG
|
A:GLU67
|
4.7
|
0.0
|
1.0
|
HD22
|
A:ASN60
|
4.8
|
0.0
|
1.0
|
HG21
|
A:ILE63
|
4.8
|
0.0
|
1.0
|
N
|
A:ASP58
|
4.8
|
0.0
|
1.0
|
HA3
|
A:GLY59
|
4.9
|
0.0
|
1.0
|
CA
|
A:THR62
|
5.0
|
0.0
|
1.0
|
HG2
|
A:GLU67
|
5.0
|
0.0
|
1.0
|
|
Calcium binding site 3 out
of 4 in 2bbn
Go back to
Calcium Binding Sites List in 2bbn
Calcium binding site 3 out
of 4 in the Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca183
b:0.0
occ:1.00
|
HB3
|
A:ASP93
|
1.7
|
0.0
|
1.0
|
O
|
A:GLY96
|
1.7
|
0.0
|
1.0
|
CB
|
A:ASP93
|
2.3
|
0.0
|
1.0
|
CG
|
A:ASP93
|
2.3
|
0.0
|
1.0
|
OD2
|
A:ASP93
|
2.4
|
0.0
|
1.0
|
HA
|
A:ASN97
|
2.6
|
0.0
|
1.0
|
C
|
A:GLY96
|
2.8
|
0.0
|
1.0
|
HA
|
A:ASP93
|
3.0
|
0.0
|
1.0
|
OD1
|
A:ASP93
|
3.1
|
0.0
|
1.0
|
CA
|
A:ASP93
|
3.2
|
0.0
|
1.0
|
HB2
|
A:ASP93
|
3.2
|
0.0
|
1.0
|
OD1
|
A:ASP95
|
3.3
|
0.0
|
1.0
|
OE2
|
A:GLU104
|
3.3
|
0.0
|
1.0
|
OE1
|
A:GLU104
|
3.3
|
0.0
|
1.0
|
O
|
A:PHE99
|
3.3
|
0.0
|
1.0
|
OD1
|
A:ASN97
|
3.4
|
0.0
|
1.0
|
CA
|
A:ASN97
|
3.5
|
0.0
|
1.0
|
H
|
A:GLY98
|
3.5
|
0.0
|
1.0
|
N
|
A:ASN97
|
3.6
|
0.0
|
1.0
|
CD
|
A:GLU104
|
3.6
|
0.0
|
1.0
|
H
|
A:PHE99
|
3.7
|
0.0
|
1.0
|
C
|
A:ASP93
|
3.8
|
0.0
|
1.0
|
O
|
A:ASP95
|
3.9
|
0.0
|
1.0
|
H
|
A:ASP95
|
3.9
|
0.0
|
1.0
|
CA
|
A:GLY96
|
4.0
|
0.0
|
1.0
|
C
|
A:ASP95
|
4.0
|
0.0
|
1.0
|
N
|
A:GLY96
|
4.0
|
0.0
|
1.0
|
N
|
A:GLY98
|
4.2
|
0.0
|
1.0
|
O
|
A:ASP93
|
4.2
|
0.0
|
1.0
|
HA3
|
A:GLY96
|
4.3
|
0.0
|
1.0
|
CG
|
A:ASN97
|
4.3
|
0.0
|
1.0
|
C
|
A:ASN97
|
4.4
|
0.0
|
1.0
|
N
|
A:LYS94
|
4.4
|
0.0
|
1.0
|
N
|
A:ASP93
|
4.5
|
0.0
|
1.0
|
N
|
A:ASP95
|
4.5
|
0.0
|
1.0
|
H
|
A:LYS94
|
4.5
|
0.0
|
1.0
|
C
|
A:PHE99
|
4.5
|
0.0
|
1.0
|
CG
|
A:ASP95
|
4.5
|
0.0
|
1.0
|
H
|
A:ASN97
|
4.5
|
0.0
|
1.0
|
H
|
A:GLY96
|
4.5
|
0.0
|
1.0
|
HA
|
A:ILE100
|
4.5
|
0.0
|
1.0
|
CB
|
A:ASN97
|
4.6
|
0.0
|
1.0
|
N
|
A:PHE99
|
4.6
|
0.0
|
1.0
|
HD1
|
A:PHE99
|
4.8
|
0.0
|
1.0
|
H
|
A:ASP93
|
4.8
|
0.0
|
1.0
|
CA
|
A:ASP95
|
4.8
|
0.0
|
1.0
|
HA2
|
A:GLY96
|
4.8
|
0.0
|
1.0
|
|
Calcium binding site 4 out
of 4 in 2bbn
Go back to
Calcium Binding Sites List in 2bbn
Calcium binding site 4 out
of 4 in the Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr)
 Mono view
 Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca184
b:0.0
occ:1.00
|
OD2
|
A:ASP133
|
1.8
|
0.0
|
1.0
|
OD1
|
A:ASP129
|
2.2
|
0.0
|
1.0
|
CG
|
A:ASP133
|
2.6
|
0.0
|
1.0
|
HB2
|
A:ASP131
|
2.6
|
0.0
|
1.0
|
OE2
|
A:GLU140
|
2.7
|
0.0
|
1.0
|
H
|
A:ASP133
|
2.7
|
0.0
|
1.0
|
CG
|
A:ASP129
|
2.9
|
0.0
|
1.0
|
OD2
|
A:ASP129
|
3.1
|
0.0
|
1.0
|
H
|
A:GLY132
|
3.2
|
0.0
|
1.0
|
HB2
|
A:ASP133
|
3.2
|
0.0
|
1.0
|
CD
|
A:GLU140
|
3.3
|
0.0
|
1.0
|
OE1
|
A:GLU140
|
3.3
|
0.0
|
1.0
|
OD2
|
A:ASP131
|
3.3
|
0.0
|
1.0
|
OD1
|
A:ASP133
|
3.3
|
0.0
|
1.0
|
O
|
A:GLN135
|
3.3
|
0.0
|
1.0
|
CB
|
A:ASP133
|
3.4
|
0.0
|
1.0
|
CB
|
A:ASP131
|
3.6
|
0.0
|
1.0
|
N
|
A:ASP133
|
3.6
|
0.0
|
1.0
|
CG
|
A:ASP131
|
3.9
|
0.0
|
1.0
|
H
|
A:GLY134
|
3.9
|
0.0
|
1.0
|
HB2
|
A:ASN137
|
4.0
|
0.0
|
1.0
|
N
|
A:GLY132
|
4.0
|
0.0
|
1.0
|
HA
|
A:ASP129
|
4.1
|
0.0
|
1.0
|
H
|
A:ASN137
|
4.1
|
0.0
|
1.0
|
CA
|
A:ASP133
|
4.1
|
0.0
|
1.0
|
HB3
|
A:ASP131
|
4.2
|
0.0
|
1.0
|
H
|
A:ASP131
|
4.2
|
0.0
|
1.0
|
HA
|
A:VAL136
|
4.3
|
0.0
|
1.0
|
CB
|
A:ASP129
|
4.3
|
0.0
|
1.0
|
HB3
|
A:ASP133
|
4.3
|
0.0
|
1.0
|
H
|
A:GLN135
|
4.4
|
0.0
|
1.0
|
C
|
A:GLN135
|
4.5
|
0.0
|
1.0
|
CA
|
A:ASP131
|
4.5
|
0.0
|
1.0
|
N
|
A:ASP131
|
4.6
|
0.0
|
1.0
|
CA
|
A:ASP129
|
4.6
|
0.0
|
1.0
|
C
|
A:GLY132
|
4.7
|
0.0
|
1.0
|
N
|
A:GLY134
|
4.7
|
0.0
|
1.0
|
C
|
A:ASP131
|
4.7
|
0.0
|
1.0
|
CG
|
A:GLU140
|
4.7
|
0.0
|
1.0
|
N
|
A:ASN137
|
4.8
|
0.0
|
1.0
|
CA
|
A:GLY132
|
4.8
|
0.0
|
1.0
|
HB2
|
A:ASP129
|
4.9
|
0.0
|
1.0
|
C
|
A:ASP129
|
4.9
|
0.0
|
1.0
|
C
|
A:ASP133
|
4.9
|
0.0
|
1.0
|
HB3
|
A:ASP129
|
5.0
|
0.0
|
1.0
|
HA2
|
A:GLY132
|
5.0
|
0.0
|
1.0
|
N
|
A:GLN135
|
5.0
|
0.0
|
1.0
|
|
Reference:
M.Ikura,
G.M.Clore,
A.M.Gronenborn,
G.Zhu,
C.B.Klee,
A.Bax.
Solution Structure of A Calmodulin-Target Peptide Complex By Multidimensional uc(Nmr). Science V. 256 632 1992.
ISSN: ISSN 0036-8075
PubMed: 1585175
Page generated: Fri Jul 12 08:58:52 2024
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