Calcium in PDB 2bbv: The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution

The structure of The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution, PDB code: 2bbv was solved by J.-P.Wery, V.S.Reddy, M.V.Hosur, J.E.Johnson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	6.00 / 2.80
Space group	P 42 3 2 3
Cell size a, b, c (Å), α, β, γ (°)	362.000, 362.000, 362.000, 90.00, 90.00, 90.00
R / Rfree (%)	22.1 / n/a

The binding sites of Calcium atom in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution (pdb code 2bbv). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution, PDB code: 2bbv:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca364 b:13.9 occ:1.00 O A:GLY273 2.3 17.4 1.0 OD2 A:ASP221 2.4 13.5 1.0 OD1 B:ASP161 2.7 15.2 1.0 C A:GLY273 3.5 16.2 1.0 CG A:ASP221 3.5 13.5 1.0 CG B:ASP161 3.9 13.5 1.0 OD1 A:ASP221 4.0 14.4 1.0 O B:ALA157 4.3 13.3 1.0 CA A:GLY273 4.3 16.3 1.0 OD2 B:ASP161 4.4 14.2 1.0 N A:GLN274 4.4 14.2 1.0 CD A:PRO275 4.5 9.8 1.0 CA A:GLN274 4.6 12.4 1.0 CB A:ASP221 4.8 11.1 1.0 N A:PRO275 4.8 10.4 1.0 OE2 B:GLU257 4.8 6.1 1.0 C A:GLN274 4.9 11.1 1.0 N B:ASP161 4.9 10.1 1.0 CA B:ASP161 4.9 10.3 1.0 C B:SER160 5.0 9.1 1.0 CA B:SER158 5.0 12.9 1.0

Calcium binding site 2 out of 5 in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca365 b:50.8 occ:1.00 OE1 A:GLU251 2.6 33.2 1.0 OE1 C:GLU251 2.7 31.9 1.0 OE1 B:GLU251 3.1 31.9 1.0 CD A:GLU251 3.7 32.9 1.0 CD C:GLU251 3.7 31.3 1.0 CD B:GLU251 4.0 30.5 1.0 OE2 C:GLU251 4.0 30.0 1.0 OE2 A:GLU251 4.1 36.6 1.0 OE2 B:GLU251 4.3 34.5 1.0

Calcium binding site 3 out of 5 in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca364 b:12.8 occ:1.00 OD2 B:ASP221 2.3 14.5 1.0 OD1 C:ASP161 2.5 16.3 1.0 O B:GLY273 2.6 18.6 1.0 CG B:ASP221 3.5 12.6 1.0 CG C:ASP161 3.7 12.8 1.0 C B:GLY273 3.8 17.1 1.0 OD1 B:ASP221 4.0 14.7 1.0 O C:ALA157 4.0 16.1 1.0 OD2 C:ASP161 4.3 14.3 1.0 OE2 C:GLU257 4.4 8.7 1.0 CA B:GLY273 4.5 17.3 1.0 O B:HOH407 4.6 2.0 0.8 O B:HOH416 4.6 0.0 1.0 CA C:ASP161 4.7 7.8 1.0 CB B:ASP221 4.7 8.9 1.0 CD B:PRO275 4.7 10.1 1.0 CB C:ASP161 4.8 8.7 1.0 N C:ASP161 4.8 7.9 1.0 N B:GLN274 4.8 15.1 1.0 N B:PRO275 4.9 10.8 1.0 CA C:SER158 5.0 16.3 1.0 CA B:GLN274 5.0 12.9 1.0

Calcium binding site 4 out of 5 in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca364 b:16.9 occ:1.00 O C:GLY273 2.2 17.7 1.0 OD1 C:ASP221 3.0 17.9 1.0 C C:GLY273 3.3 15.8 1.0 OD1 A:ASP161 3.7 12.1 1.0 OD2 C:ASP221 3.8 18.0 1.0 CG C:ASP221 3.9 16.6 1.0 O A:ALA157 4.2 12.1 1.0 CG A:ASP161 4.2 12.1 1.0 N C:GLN274 4.2 13.7 1.0 CA C:GLY273 4.3 15.7 1.0 CA C:GLN274 4.3 11.4 1.0 OD2 A:ASP161 4.4 16.3 1.0 C C:GLN274 4.6 11.3 1.0 CD C:PRO275 4.6 9.6 1.0 N C:PRO275 4.7 10.1 1.0 CA A:SER158 4.8 10.7 1.0 N A:ASP161 4.9 9.5 1.0 OG A:SER160 5.0 9.7 1.0

Calcium binding site 5 out of 5 in the The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of The Refined Three-Dimensional Structure of An Insect Virus at 2.8 Angstroms Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca365 b:26.6 occ:1.00 OD2 A:ASP249 2.3 23.7 1.0 OE2 C:GLU251 2.8 30.0 1.0 OD2 B:ASP249 2.8 26.1 1.0 OD2 C:ASP249 2.9 19.9 1.0 OD1 C:ASP249 3.0 27.9 1.0 CG C:ASP249 3.2 24.5 1.0 OE2 A:GLU251 3.4 36.6 1.0 CG A:ASP249 3.5 21.7 1.0 OE2 B:GLU251 3.5 34.5 1.0 CG B:ASP249 3.6 23.9 1.0 CD C:GLU251 3.6 31.3 1.0 CB B:ASP249 3.6 19.8 1.0 OD1 A:ASP249 4.0 18.3 1.0 CD B:GLU251 4.1 30.5 1.0 CG C:GLU251 4.2 24.2 1.0 CG B:GLU251 4.3 22.9 1.0 CD A:GLU251 4.4 32.9 1.0 OE1 C:GLU251 4.4 31.9 1.0 CB C:ASP249 4.5 22.6 1.0 CB A:ASP249 4.7 19.6 1.0 OD1 B:ASP249 4.8 26.8 1.0 OE1 A:GLU251 4.9 33.2 1.0 OE1 B:GLU251 4.9 31.9 1.0

J.P.Wery, V.S.Reddy, M.V.Hosur, J.E.Johnson. The Refined Three-Dimensional Structure of An Insect Virus at 2.8 A Resolution. J.Mol.Biol. V. 235 565 1994.
ISSN: ISSN 0022-2836
PubMed: 8289282
DOI: 10.1006/JMBI.1994.1014