Atomistry » Calcium » PDB 2b04-2bib » 2bfn
Atomistry »
  Calcium »
    PDB 2b04-2bib »
      2bfn »

Calcium in PDB 2bfn: The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane.

Enzymatic activity of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane.

All present enzymatic activity of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane.:
3.8.1.5;

Protein crystallography data

The structure of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane., PDB code: 2bfn was solved by P.Banas, M.Otyepka, P.Jerabek, J.Vevodova, M.Bohac, J.Damborsky, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 72.55 / 1.6
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 50.571, 72.142, 73.311, 90.00, 90.00, 90.00
R / Rfree (%) 14.9 / 17.1

Other elements in 2bfn:

The structure of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane. also contains other interesting chemical elements:

Chlorine (Cl) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane. (pdb code 2bfn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane., PDB code: 2bfn:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 2bfn

Go back to Calcium Binding Sites List in 2bfn
Calcium binding site 1 out of 3 in the The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1299

b:5.4
occ:1.00
 OE1 A:GLN165 2.3 7.2 1.0
OD1 A:ASP166 2.4 6.5 1.0
OD2 A:ASP166 2.5 7.5 1.0
O A:HOH2207 2.6 31.5 1.0
CG A:ASP166 2.8 6.1 1.0
O A:HOH2208 3.4 27.0 1.0
CD A:GLN165 3.4 10.5 1.0
CG A:GLN165 3.9 9.5 1.0
CB A:ASP166 4.3 4.9 1.0
O A:HOH2202 4.3 25.9 1.0
OE2 A:GLU161 4.4 14.2 0.7
O A:HOH2203 4.5 7.7 1.0
NE2 A:GLN165 4.5 13.9 1.0
CB A:GLN165 4.8 7.2 1.0
O A:HOH2205 4.8 15.4 1.0
CG A:GLU161 4.9 11.8 1.0
OE2 A:GLU161 5.0 13.1 0.3

Calcium binding site 2 out of 3 in 2bfn

Go back to Calcium Binding Sites List in 2bfn
Calcium binding site 2 out of 3 in the The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1300

b:12.4
occ:1.00
 OD1 A:ASP149 2.1 10.3 0.3
O A:HOH2185 2.3 7.9 1.0
O A:HOH2186 2.3 22.2 1.0
OD1 A:ASP149 2.4 9.7 0.7
OE1 A:GLN152 2.4 9.4 1.0
CG A:ASP149 3.3 10.8 0.3
CG A:ASP149 3.4 11.9 0.7
CD A:GLN152 3.5 6.8 1.0
O A:HOH2181 4.0 30.9 1.0
NE2 A:GLN152 4.0 6.6 1.0
OD2 A:ASP149 4.0 13.5 0.7
OD2 A:ASP149 4.0 10.6 0.3
CB A:ASP149 4.3 9.8 1.0
CA A:ASP149 4.3 9.5 1.0
O A:HOH2182 4.4 26.4 1.0
O A:HOH2180 4.5 11.0 1.0
CG A:GLN152 4.8 6.1 1.0
N A:ASP149 4.8 9.4 1.0

Calcium binding site 3 out of 3 in 2bfn

Go back to Calcium Binding Sites List in 2bfn
Calcium binding site 3 out of 3 in the The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Crystal Structure of the Complex of the Haloalkane Dehalogenase Linb with the Product of Dehalogenation Reaction 1,2-Dichloropropane. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1301

b:12.4
occ:0.50
 O A:HOH2038 2.4 12.9 1.0
O A:HOH2039 2.4 13.8 1.0
O A:HOH2019 2.5 22.5 1.0
O A:HOH2040 2.5 22.2 1.0
OD1 A:ASP30 4.2 9.5 1.0
O A:HOH2148 4.3 21.6 1.0
OD1 A:ASP100 4.4 8.2 1.0
OD2 A:ASP30 4.4 10.0 1.0
CG A:ASP30 4.7 8.9 1.0
O A:HOH2020 5.0 25.2 1.0

Reference:

M.Minincova, Z.Prokop, J.Vevodova, Y.Nagata, J.Damborsky. Weak Activity of Haloalkane Dehalogenase Linb with 1,2,3-Trichloropropane Revealed By X-Ray Crystallography and Microcalorimetry Appl.Environ.Microbiol. V. 73 2005 2007.
ISSN: ISSN 0099-2240
PubMed: 17259360
DOI: 10.1128/AEM.02416-06
Page generated: Fri Jul 12 09:02:08 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy