Calcium in PDB 2lhi: Solution Structure of CA2+/CNA1 Peptide-Bound Ycam

The binding sites of Calcium atom in the Solution Structure of CA2+/CNA1 Peptide-Bound Ycam (pdb code 2lhi). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Solution Structure of CA2+/CNA1 Peptide-Bound Ycam, PDB code: 2lhi:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Solution Structure of CA2+/CNA1 Peptide-Bound Ycam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Solution Structure of CA2+/CNA1 Peptide-Bound Ycam within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:60.4 occ:1.00 HA A:ASP20 2.7 72.2 1.0 OD1 A:ASP20 2.8 71.2 1.0 OE1 A:GLU31 2.8 61.4 1.0 OE2 A:GLU31 2.8 51.1 1.0 OD1 A:ASN24 2.8 41.2 1.0 O A:SER26 2.8 33.3 1.0 CD A:GLU31 3.1 3.0 1.0 OD2 A:ASP22 3.2 42.4 1.0 HA A:ILE27 3.3 24.4 1.0 H A:LYS21 3.3 1.2 1.0 HE2 A:GLU31 3.4 20.1 1.0 H A:ASN24 3.5 12.1 1.0 OD1 A:ASP22 3.6 41.0 1.0 CG A:ASP22 3.6 45.5 1.0 CG A:ASP20 3.7 43.2 1.0 CG A:ASN24 3.7 34.2 1.0 CA A:ASP20 3.7 32.3 1.0 H A:SER26 3.8 41.1 1.0 C A:SER26 3.8 2.2 1.0 H A:ASP22 3.8 72.2 1.0 H A:ASN23 3.9 41.5 1.0 HD22 A:ASN24 3.9 74.3 1.0 N A:LYS21 3.9 3.0 1.0 H A:SER28 4.0 12.4 1.0 HG12 A:ILE27 4.1 52.4 1.0 ND2 A:ASN24 4.2 15.4 1.0 C A:ASP20 4.3 61.2 1.0 CB A:ASP20 4.3 72.4 1.0 HD2 A:ASP20 4.3 64.4 1.0 CA A:ILE27 4.3 44.5 1.0 H A:GLY25 4.3 61.2 1.0 N A:ILE27 4.5 35.4 1.0 HG13 A:ILE27 4.5 52.4 1.0 CG A:GLU31 4.5 42.1 1.0 N A:ASP22 4.5 44.4 1.0 N A:ASN23 4.5 30.1 1.0 N A:ASN24 4.5 45.3 1.0 OD2 A:ASP20 4.5 10.3 1.0 HB3 A:GLU31 4.6 42.3 1.0 HB2 A:GLU31 4.6 74.1 1.0 N A:SER26 4.7 74.0 1.0 HA A:ASN23 4.7 23.0 1.0 N A:ASP20 4.7 23.2 1.0 CG1 A:ILE27 4.8 41.3 1.0 CB A:GLU31 4.8 64.2 1.0 CA A:SER26 4.8 54.1 1.0 O A:PHE19 4.8 34.0 1.0 CB A:ASN24 4.9 74.2 1.0 HB2 A:LYS21 4.9 45.4 1.0 N A:SER28 4.9 45.4 1.0 HB3 A:ASN24 4.9 1.4 1.0 HG2 A:LYS21 4.9 50.4 1.0 HG2 A:GLU31 4.9 41.4 1.0 CB A:ASP22 4.9 23.5 1.0 HB3 A:ASP20 4.9 75.2 1.0 HB2 A:SER26 5.0 35.1 1.0

Calcium binding site 2 out of 3 in the Solution Structure of CA2+/CNA1 Peptide-Bound Ycam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Solution Structure of CA2+/CNA1 Peptide-Bound Ycam within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:64.2 occ:1.00 HD22 A:ASN60 2.6 42.1 1.0 HB2 A:GLU64 2.7 20.1 1.0 HE2 A:GLU67 2.7 30.1 1.0 OE2 A:GLU67 2.8 3.4 1.0 OE1 A:GLU67 2.8 41.4 1.0 O A:GLN62 2.9 12.3 1.0 OD1 A:ASP56 2.9 23.1 1.0 OD1 A:ASN60 2.9 65.2 1.0 ND2 A:ASN60 3.1 0.3 1.0 CD A:GLU67 3.1 43.1 1.0 OD2 A:ASP58 3.2 13.4 1.0 H A:GLU64 3.2 14.4 1.0 CG A:ASN60 3.2 71.4 1.0 HG3 A:GLU64 3.4 14.2 1.0 N A:GLU64 3.5 4.4 1.0 OD1 A:ASP58 3.6 43.4 1.0 CB A:GLU64 3.6 22.0 1.0 CG A:ASP58 3.6 71.2 1.0 HA A:ILE63 3.7 62.3 1.0 C A:GLN62 3.7 21.2 1.0 HB2 A:GLN62 3.9 21.1 1.0 HD21 A:ASN60 3.9 63.4 1.0 CG A:ASP56 4.0 64.1 1.0 C A:ILE63 4.0 3.1 1.0 CG A:GLU64 4.0 55.4 1.0 CA A:GLU64 4.1 51.2 1.0 CA A:ILE63 4.2 63.2 1.0 HB3 A:SER26 4.3 55.3 1.0 N A:ILE63 4.3 53.3 1.0 HA A:GLU64 4.3 32.3 1.0 H A:ASN60 4.4 41.4 1.0 HB3 A:GLU64 4.4 44.3 1.0 H A:GLN62 4.5 54.2 1.0 HA A:SER26 4.5 21.4 1.0 HA A:ASP56 4.5 0.2 1.0 H A:ASP58 4.5 73.4 1.0 OD2 A:ASP56 4.5 43.4 1.0 CB A:ASN60 4.6 43.2 1.0 CG A:GLU67 4.6 42.0 1.0 HB3 A:ASN60 4.6 20.4 1.0 H A:VAL57 4.7 14.4 1.0 CB A:GLN62 4.7 24.0 1.0 CA A:GLN62 4.7 24.1 1.0 OE2 A:GLU64 4.7 64.0 1.0 O A:GLY25 4.8 1.1 1.0 HB2 A:GLU67 4.8 74.3 1.0 HB3 A:GLN62 4.8 23.3 1.0 O A:ILE63 4.8 55.1 1.0 HG2 A:GLU64 4.9 3.0 1.0 CD A:GLU64 4.9 21.3 1.0 HG3 A:GLU67 4.9 31.1 1.0 HB3 A:ASP58 4.9 22.2 1.0 CB A:ASP58 4.9 1.1 1.0

Calcium binding site 3 out of 3 in the Solution Structure of CA2+/CNA1 Peptide-Bound Ycam


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Solution Structure of CA2+/CNA1 Peptide-Bound Ycam within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:23.2 occ:1.00 HB3 A:ASN95 2.6 43.4 1.0 HB3 A:ASP97 2.6 22.3 1.0 OD1 A:ASP97 2.8 21.2 1.0 O A:LEU99 2.8 42.5 1.0 OE1 A:GLU104 2.8 64.5 1.0 OE2 A:GLU104 2.9 71.5 1.0 OD1 A:ASN95 2.9 34.4 1.0 H A:ASP97 3.0 60.0 1.0 H A:GLY96 3.1 10.3 1.0 CD A:GLU104 3.2 54.5 1.0 OD2 A:ASP93 3.2 72.0 1.0 CG A:ASP97 3.3 14.2 1.0 CB A:ASP97 3.3 21.1 1.0 CB A:ASN95 3.5 44.4 1.0 N A:ASP97 3.5 72.0 1.0 CG A:ASN95 3.5 65.4 1.0 H A:LEU99 3.5 50.3 1.0 OD1 A:ASP93 3.6 55.0 1.0 CG A:ASP93 3.6 0.3 1.0 N A:GLY96 3.8 43.2 1.0 HE2 A:GLU104 3.8 12.5 1.0 H A:SER101 3.9 32.3 1.0 H A:ASN95 3.9 2.1 1.0 C A:LEU99 3.9 22.1 1.0 CA A:ASP97 4.0 30.1 1.0 HA A:ILE100 4.1 21.2 1.0 HB2 A:ASN95 4.2 63.3 1.0 C A:GLY96 4.2 43.2 1.0 HB2 A:ASP97 4.2 64.2 1.0 HD2 A:ASP97 4.2 74.1 1.0 HA A:ASP93 4.3 13.3 1.0 OE1 A:GLU134 4.3 22.1 1.0 OD2 A:ASP97 4.3 42.4 1.0 CA A:ASN95 4.4 1.2 1.0 C A:ASN95 4.4 2.5 1.0 N A:LEU99 4.4 72.3 1.0 HB2 A:SER101 4.5 55.4 1.0 HB2 A:LEU99 4.5 74.2 1.0 CA A:GLY96 4.5 41.2 1.0 N A:ASN95 4.5 60.1 1.0 H A:GLY98 4.6 4.2 1.0 C A:ASP97 4.6 71.5 1.0 CG A:GLU104 4.6 33.2 1.0 HA2 A:GLY96 4.6 14.5 1.0 CA A:LEU99 4.7 60.4 1.0 N A:SER101 4.8 0.0 1.0 N A:GLY98 4.8 63.3 1.0 ND2 A:ASN95 4.8 73.3 1.0 N A:ILE100 4.8 21.2 1.0 HG2 A:GLU104 4.9 54.2 1.0 HA A:ASP97 4.9 42.1 1.0 CB A:ASP93 4.9 53.4 1.0 CA A:ILE100 4.9 10.3 1.0 CA A:ASP93 5.0 31.2 1.0

K.Ogura, H.Kumeta, K.Takahasi, Y.Kobashigawa, R.Yoshida, H.Itoh, M.Yazawa, F.Inagaki. Solution Structures of Yeast Saccharomyces Cerevisiae Calmodulin in Calcium- and Target Peptide-Bound States Reveal Similarities and Differences to Vertebrate Calmodulin. Genes Cells V. 17 159 2012.
ISSN: ISSN 1356-9597
PubMed: 22280008
DOI: 10.1111/J.1365-2443.2012.01580.X