Atomistry » Calcium » PDB 2yi1-2z8s » 2yll
Atomistry »
  Calcium »
    PDB 2yi1-2z8s »
      2yll »

Calcium in PDB 2yll: Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis

Enzymatic activity of Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis

All present enzymatic activity of Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis:
3.2.1.52;

Protein crystallography data

The structure of Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis, PDB code: 2yll was solved by B.Pluvinage, M.A.Higgins, D.W.Abbott, C.Robb, A.B.Dalia, L.Deng, J.N.Weiser, T.B.Parsons, A.J.Fairbanks, D.J.Vocadlo, A.B.Boraston, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 78.39 / 1.85
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.520, 109.420, 112.360, 90.00, 90.00, 90.00
R / Rfree (%) 16.123 / 20.033

Other elements in 2yll:

The structure of Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis also contains other interesting chemical elements:

Iodine (I) 68 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis (pdb code 2yll). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis, PDB code: 2yll:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2yll

Go back to Calcium Binding Sites List in 2yll
Calcium binding site 1 out of 2 in the Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1615

b:19.5
occ:0.77
 O A:HOH2302 2.3 26.5 1.0
O A:HOH2026 2.3 25.9 1.0
O A:HOH2299 2.4 34.0 1.0
OE2 A:GLU361 2.4 12.4 1.0
OE1 A:GLU361 2.4 9.1 1.0
O A:HOH2484 2.4 37.3 1.0
O A:HOH2301 2.5 28.4 1.0
CD A:GLU361 2.8 11.1 1.0
O A:HOH2300 2.9 22.4 1.0
O A:HOH2213 4.1 36.5 1.0
CG A:GLU361 4.3 10.4 1.0
O1 A:EDO1618 4.4 16.3 1.0
O A:HOH2303 4.5 24.7 1.0
CE1 A:HIS297 4.5 11.8 1.0
NE2 A:HIS297 4.5 10.8 1.0
O2 A:EDO1618 4.6 14.3 1.0
C2 A:EDO1618 4.7 15.6 1.0
O2 A:EDO1619 4.8 20.4 1.0
O A:HOH2456 4.9 26.5 1.0
NH2 A:ARG196 4.9 9.6 1.0

Calcium binding site 2 out of 2 in 2yll

Go back to Calcium Binding Sites List in 2yll
Calcium binding site 2 out of 2 in the Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1616

b:15.3
occ:0.52
 OD1 A:ASP477 2.4 12.1 1.0
OD2 A:ASP485 2.4 9.2 1.0
O A:HOH2449 2.5 30.2 1.0
O A:HOH2448 2.6 37.4 1.0
O A:HOH2594 2.6 34.0 1.0
CG A:ASP477 3.5 12.1 1.0
CG A:ASP485 3.5 11.0 1.0
OD1 A:ASP485 4.0 11.6 1.0
N A:ASP477 4.0 10.2 1.0
CB A:ASP477 4.1 10.3 1.0
O A:HOH2274 4.2 33.3 1.0
CB A:ALA476 4.3 11.0 1.0
OD2 A:ASP477 4.4 11.7 1.0
CB A:ASP485 4.6 8.2 1.0
O A:HOH2450 4.7 23.8 1.0
CA A:ASP477 4.7 10.3 1.0
CA A:ALA476 4.8 10.8 1.0
C A:ALA476 4.9 10.5 1.0

Reference:

B.Pluvinage, M.A.Higgins, D.W.Abbott, C.Robb, A.B.Dalia, L.Deng, J.N.Weiser, T.B.Parsons, A.J.Fairbanks, D.J.Vocadlo, A.B.Boraston. Inhibition of the Pneumococcal Virulence Factor Strh and Molecular Insights Into N-Glycan Recognition and Hydrolysis. Structure V. 19 1603 2011.
ISSN: ISSN 0969-2126
PubMed: 22078560
DOI: 10.1016/J.STR.2011.08.011
Page generated: Fri Jul 12 19:33:54 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy