Calcium in PDB 2yn3: Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Protein crystallography data
The structure of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells, PDB code: 2yn3
was solved by
M.H.Griessl,
B.Schmid,
K.Kassler,
C.Braunsmann,
R.Ritter,
B.Barlag,
K.U.Sturm,
C.Danzer,
C.Wagner,
T.E.Schaeffer,
H.Sticht,
M.Hensel,
Y.A.Muller,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
34.32 /
2.12
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.480,
153.309,
96.300,
90.00,
103.88,
90.00
|
R / Rfree (%)
|
21.024 /
25.971
|
Other elements in 2yn3:
The structure of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Calcium atom in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
(pdb code 2yn3). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 13 binding sites of Calcium where determined in the
Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells, PDB code: 2yn3:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 1 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca6362
b:19.0
occ:1.00
|
OD1
|
A:ASP5157
|
2.2
|
18.0
|
1.0
|
O
|
A:GLU5136
|
2.3
|
16.8
|
1.0
|
O
|
A:ILE5158
|
2.4
|
17.6
|
1.0
|
OD2
|
A:ASP5196
|
2.4
|
17.8
|
1.0
|
OD2
|
A:ASP5240
|
2.4
|
18.9
|
1.0
|
O
|
A:HOH2068
|
2.5
|
18.9
|
1.0
|
CG
|
A:ASP5157
|
3.4
|
18.1
|
1.0
|
C
|
A:GLU5136
|
3.4
|
18.9
|
1.0
|
CG
|
A:ASP5196
|
3.4
|
18.3
|
1.0
|
C
|
A:ILE5158
|
3.5
|
16.9
|
1.0
|
CG
|
A:ASP5240
|
3.5
|
18.5
|
1.0
|
OD1
|
A:ASP5196
|
3.8
|
18.4
|
1.0
|
O
|
A:HOH2082
|
3.9
|
22.3
|
1.0
|
OD2
|
A:ASP5157
|
3.9
|
18.8
|
1.0
|
N
|
A:ILE5158
|
4.0
|
16.9
|
1.0
|
CB
|
A:ASP5240
|
4.0
|
17.6
|
1.0
|
C
|
A:ASP5157
|
4.1
|
17.9
|
1.0
|
ND2
|
A:ASN5244
|
4.2
|
15.4
|
1.0
|
CA
|
A:GLU5136
|
4.3
|
18.0
|
1.0
|
N
|
A:MSE5159
|
4.3
|
18.3
|
1.0
|
N
|
A:GLY5137
|
4.3
|
16.6
|
1.0
|
CA
|
A:MSE5159
|
4.3
|
20.3
|
1.0
|
CA
|
A:ILE5158
|
4.4
|
16.3
|
1.0
|
CB
|
A:MSE5159
|
4.4
|
19.7
|
1.0
|
CA
|
A:GLY5137
|
4.4
|
17.6
|
1.0
|
O
|
A:ASP5157
|
4.4
|
16.9
|
1.0
|
OD1
|
A:ASP5240
|
4.5
|
18.8
|
1.0
|
CB
|
A:ASP5157
|
4.6
|
18.2
|
1.0
|
CB
|
A:GLU5136
|
4.6
|
18.6
|
1.0
|
CA
|
A:ASP5157
|
4.6
|
18.5
|
1.0
|
C
|
A:GLY5137
|
4.6
|
17.8
|
1.0
|
O
|
A:GLY5137
|
4.7
|
19.8
|
1.0
|
CB
|
A:ASP5196
|
4.8
|
18.6
|
1.0
|
OE1
|
A:GLU5194
|
4.9
|
16.9
|
1.0
|
OH
|
A:TYR5133
|
4.9
|
18.2
|
1.0
|
CG
|
A:LYS5138
|
4.9
|
18.3
|
1.0
|
CG
|
A:MSE5159
|
5.0
|
25.2
|
1.0
|
|
Calcium binding site 2 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 2 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca6363
b:20.6
occ:1.00
|
O
|
A:ILE5180
|
2.3
|
19.3
|
1.0
|
OD1
|
A:ASP5172
|
2.3
|
23.8
|
1.0
|
O
|
A:THR5175
|
2.3
|
26.5
|
1.0
|
O
|
A:SER5173
|
2.4
|
22.1
|
1.0
|
O
|
A:HOH2099
|
2.4
|
16.2
|
1.0
|
OD1
|
A:ASP5178
|
2.5
|
17.6
|
1.0
|
CG
|
A:ASP5178
|
3.4
|
18.3
|
1.0
|
C
|
A:ILE5180
|
3.4
|
22.2
|
1.0
|
CG
|
A:ASP5172
|
3.5
|
23.8
|
1.0
|
C
|
A:THR5175
|
3.5
|
28.2
|
1.0
|
C
|
A:SER5173
|
3.6
|
24.1
|
1.0
|
OD2
|
A:ASP5178
|
3.6
|
16.1
|
1.0
|
N
|
A:ILE5180
|
4.0
|
22.1
|
1.0
|
N
|
A:SER5173
|
4.0
|
22.0
|
1.0
|
N
|
A:THR5175
|
4.0
|
29.4
|
1.0
|
C
|
A:ASP5172
|
4.1
|
22.4
|
1.0
|
OD2
|
A:ASP5172
|
4.1
|
28.9
|
1.0
|
CA
|
A:ILE5180
|
4.1
|
21.7
|
1.0
|
C
|
A:GLY5174
|
4.2
|
26.3
|
1.0
|
CA
|
A:THR5175
|
4.3
|
28.8
|
1.0
|
O
|
A:ASP5172
|
4.3
|
23.5
|
1.0
|
CB
|
A:ILE5180
|
4.4
|
21.8
|
1.0
|
CA
|
A:SER5173
|
4.4
|
22.1
|
1.0
|
N
|
A:THR5181
|
4.5
|
22.4
|
1.0
|
N
|
A:VAL5176
|
4.5
|
29.8
|
1.0
|
N
|
A:GLY5174
|
4.5
|
23.5
|
1.0
|
CA
|
A:ASP5172
|
4.6
|
22.4
|
1.0
|
CA
|
A:VAL5176
|
4.6
|
35.6
|
1.0
|
O
|
A:GLY5174
|
4.6
|
26.0
|
1.0
|
CB
|
A:ASP5172
|
4.6
|
22.3
|
1.0
|
CA
|
A:GLY5174
|
4.6
|
26.2
|
1.0
|
CA
|
A:THR5181
|
4.7
|
20.6
|
1.0
|
CB
|
A:THR5175
|
4.7
|
30.1
|
1.0
|
CB
|
A:ASP5178
|
4.7
|
18.1
|
1.0
|
N
|
A:ASP5178
|
4.8
|
22.3
|
1.0
|
N
|
A:ASN5179
|
4.8
|
19.8
|
1.0
|
O
|
A:ARG5344
|
4.9
|
25.5
|
1.0
|
OG
|
A:SER5173
|
4.9
|
20.5
|
1.0
|
|
Calcium binding site 3 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 3 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca6364
b:29.1
occ:1.00
|
OD2
|
A:ASP5296
|
2.3
|
33.5
|
1.0
|
O
|
A:HOH2163
|
2.3
|
24.2
|
1.0
|
OD1
|
A:ASP5256
|
2.3
|
27.1
|
1.0
|
O
|
A:THR5258
|
2.3
|
29.0
|
1.0
|
OD2
|
A:ASP5343
|
2.4
|
21.8
|
1.0
|
O
|
A:HOH2160
|
2.5
|
41.7
|
1.0
|
OD2
|
A:ASP5256
|
2.6
|
26.4
|
1.0
|
CG
|
A:ASP5256
|
2.8
|
27.8
|
1.0
|
CG
|
A:ASP5296
|
3.2
|
36.4
|
1.0
|
OD1
|
A:ASP5296
|
3.5
|
39.3
|
1.0
|
C
|
A:THR5258
|
3.5
|
29.4
|
1.0
|
CG
|
A:ASP5343
|
3.6
|
22.0
|
1.0
|
O
|
A:HOH2162
|
4.1
|
27.8
|
1.0
|
ND2
|
A:ASN5347
|
4.1
|
26.3
|
1.0
|
CB
|
A:ASP5343
|
4.2
|
20.7
|
1.0
|
OD1
|
C:ASN5081
|
4.2
|
43.4
|
1.0
|
N
|
A:THR5258
|
4.3
|
27.7
|
1.0
|
CB
|
A:ASP5256
|
4.3
|
27.1
|
1.0
|
CA
|
A:THR5258
|
4.4
|
30.1
|
1.0
|
N
|
A:LEU5259
|
4.5
|
31.2
|
1.0
|
CB
|
A:LEU5259
|
4.5
|
27.6
|
1.0
|
CA
|
A:LEU5259
|
4.5
|
28.9
|
1.0
|
OD1
|
A:ASP5343
|
4.6
|
22.1
|
1.0
|
O
|
A:HOH2135
|
4.6
|
34.6
|
1.0
|
CB
|
A:ASP5296
|
4.6
|
38.9
|
1.0
|
CB
|
A:THR5258
|
4.6
|
29.3
|
1.0
|
OD2
|
A:ASP5294
|
4.9
|
41.1
|
1.0
|
CD1
|
A:LEU5259
|
4.9
|
28.3
|
1.0
|
|
Calcium binding site 4 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 4 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca6359
b:39.0
occ:1.00
|
O
|
B:HOH2034
|
2.3
|
39.6
|
1.0
|
OD1
|
B:ASP5157
|
2.3
|
44.1
|
1.0
|
OD2
|
B:ASP5240
|
2.3
|
45.8
|
1.0
|
O
|
B:ILE5158
|
2.3
|
36.0
|
1.0
|
O
|
B:GLU5136
|
2.5
|
35.3
|
1.0
|
OD2
|
B:ASP5196
|
2.6
|
33.8
|
1.0
|
CG
|
B:ASP5240
|
3.4
|
44.0
|
1.0
|
C
|
B:ILE5158
|
3.4
|
37.5
|
1.0
|
CG
|
B:ASP5157
|
3.5
|
39.4
|
1.0
|
C
|
B:GLU5136
|
3.6
|
36.0
|
1.0
|
CG
|
B:ASP5196
|
3.6
|
38.1
|
1.0
|
CB
|
B:ASP5240
|
3.8
|
43.8
|
1.0
|
N
|
B:ILE5158
|
3.9
|
36.0
|
1.0
|
OD1
|
B:ASP5196
|
3.9
|
40.8
|
1.0
|
OD2
|
B:ASP5157
|
4.1
|
46.4
|
1.0
|
ND2
|
B:ASN5244
|
4.1
|
41.8
|
1.0
|
C
|
B:ASP5157
|
4.2
|
36.0
|
1.0
|
CA
|
B:ILE5158
|
4.3
|
36.0
|
1.0
|
N
|
B:MSE5159
|
4.3
|
40.8
|
1.0
|
CA
|
B:GLY5137
|
4.4
|
32.4
|
1.0
|
CA
|
B:MSE5159
|
4.4
|
46.5
|
1.0
|
OD1
|
B:ASP5240
|
4.4
|
46.4
|
1.0
|
N
|
B:GLY5137
|
4.4
|
33.5
|
1.0
|
CA
|
B:GLU5136
|
4.5
|
34.1
|
1.0
|
CB
|
B:ASP5157
|
4.6
|
38.1
|
1.0
|
CA
|
B:ASP5157
|
4.6
|
36.6
|
1.0
|
C
|
B:GLY5137
|
4.6
|
32.2
|
1.0
|
CG
|
B:MSE5159
|
4.7
|
63.2
|
1.0
|
O
|
B:ASP5157
|
4.7
|
34.2
|
1.0
|
OE1
|
B:GLU5194
|
4.7
|
52.3
|
1.0
|
CB
|
B:GLU5136
|
4.7
|
39.4
|
1.0
|
O
|
B:GLY5137
|
4.8
|
34.2
|
1.0
|
CB
|
B:MSE5159
|
4.8
|
51.3
|
1.0
|
CG
|
B:LYS5138
|
5.0
|
37.0
|
1.0
|
|
Calcium binding site 5 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 5 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca6360
b:61.8
occ:1.00
|
O
|
B:SER5173
|
2.0
|
56.3
|
1.0
|
OD1
|
B:ASP5172
|
2.1
|
51.7
|
1.0
|
O
|
B:HOH2044
|
2.4
|
56.8
|
1.0
|
O
|
B:THR5175
|
2.4
|
69.4
|
1.0
|
O
|
B:ILE5180
|
2.4
|
55.2
|
1.0
|
OD1
|
B:ASP5178
|
2.5
|
62.6
|
1.0
|
C
|
B:SER5173
|
3.2
|
57.3
|
1.0
|
CG
|
B:ASP5172
|
3.3
|
52.6
|
1.0
|
C
|
B:THR5175
|
3.4
|
67.1
|
1.0
|
CG
|
B:ASP5178
|
3.6
|
68.5
|
1.0
|
C
|
B:ILE5180
|
3.6
|
54.2
|
1.0
|
N
|
B:SER5173
|
3.8
|
57.3
|
1.0
|
OD2
|
B:ASP5172
|
3.8
|
54.6
|
1.0
|
N
|
B:THR5175
|
3.9
|
65.4
|
1.0
|
OD2
|
B:ASP5178
|
4.0
|
73.9
|
1.0
|
C
|
B:GLY5174
|
4.0
|
63.7
|
1.0
|
C
|
B:ASP5172
|
4.1
|
58.2
|
1.0
|
CA
|
B:SER5173
|
4.1
|
60.3
|
1.0
|
N
|
B:GLY5174
|
4.2
|
57.3
|
1.0
|
CA
|
B:THR5175
|
4.2
|
66.2
|
1.0
|
N
|
B:VAL5176
|
4.2
|
66.0
|
1.0
|
CA
|
B:GLY5174
|
4.3
|
61.4
|
1.0
|
N
|
B:ILE5180
|
4.3
|
54.8
|
1.0
|
CA
|
B:VAL5176
|
4.4
|
63.1
|
1.0
|
CA
|
B:ILE5180
|
4.4
|
55.2
|
1.0
|
CB
|
B:ASP5172
|
4.5
|
51.3
|
1.0
|
O
|
B:ASP5172
|
4.5
|
58.9
|
1.0
|
O
|
B:GLY5174
|
4.5
|
66.5
|
1.0
|
CA
|
B:ASP5172
|
4.5
|
53.6
|
1.0
|
N
|
B:THR5181
|
4.6
|
51.7
|
1.0
|
N
|
B:ASP5178
|
4.7
|
59.2
|
1.0
|
CB
|
B:ILE5180
|
4.7
|
56.7
|
1.0
|
CA
|
B:THR5181
|
4.7
|
48.5
|
1.0
|
N
|
B:GLY5177
|
4.7
|
60.9
|
1.0
|
CB
|
B:THR5175
|
4.8
|
66.5
|
1.0
|
CB
|
B:ASP5178
|
4.9
|
67.7
|
1.0
|
OG
|
B:SER5173
|
4.9
|
62.8
|
1.0
|
C
|
B:VAL5176
|
4.9
|
62.5
|
1.0
|
|
Calcium binding site 6 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 6 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca6361
b:57.6
occ:1.00
|
OD2
|
B:ASP5296
|
2.3
|
63.1
|
1.0
|
O
|
B:HOH2050
|
2.3
|
77.2
|
1.0
|
OD2
|
B:ASP5343
|
2.3
|
55.4
|
1.0
|
O
|
B:THR5258
|
2.3
|
58.0
|
1.0
|
OD2
|
B:ASP5256
|
2.5
|
45.0
|
1.0
|
OD1
|
B:ASP5256
|
2.5
|
50.6
|
1.0
|
CG
|
B:ASP5256
|
2.9
|
46.8
|
1.0
|
CG
|
B:ASP5296
|
3.2
|
72.0
|
1.0
|
CG
|
B:ASP5343
|
3.5
|
55.4
|
1.0
|
OD1
|
B:ASP5296
|
3.5
|
72.8
|
1.0
|
C
|
B:THR5258
|
3.5
|
61.4
|
1.0
|
ND2
|
B:ASN5347
|
4.0
|
49.2
|
1.0
|
CB
|
B:ASP5343
|
4.1
|
55.2
|
1.0
|
CB
|
B:LEU5259
|
4.2
|
67.4
|
1.0
|
O
|
B:HOH2049
|
4.3
|
52.1
|
1.0
|
N
|
B:LEU5259
|
4.4
|
62.0
|
1.0
|
CA
|
B:LEU5259
|
4.4
|
65.3
|
1.0
|
CB
|
B:ASP5256
|
4.4
|
49.9
|
1.0
|
N
|
B:THR5258
|
4.4
|
54.5
|
1.0
|
OD1
|
B:ASP5343
|
4.5
|
63.2
|
1.0
|
CA
|
B:THR5258
|
4.5
|
62.2
|
1.0
|
CD1
|
B:LEU5259
|
4.6
|
71.3
|
1.0
|
CB
|
B:ASP5296
|
4.6
|
71.6
|
1.0
|
OG1
|
B:THR5258
|
4.7
|
63.2
|
1.0
|
|
Calcium binding site 7 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 7 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca6367
b:20.3
occ:1.00
|
O
|
C:ILE5158
|
2.3
|
18.6
|
1.0
|
OD1
|
C:ASP5157
|
2.3
|
21.9
|
1.0
|
OD2
|
C:ASP5196
|
2.4
|
21.8
|
1.0
|
O
|
C:GLU5136
|
2.4
|
19.8
|
1.0
|
O
|
C:HOH2059
|
2.4
|
14.7
|
1.0
|
OD2
|
C:ASP5240
|
2.5
|
21.2
|
1.0
|
CG
|
C:ASP5196
|
3.4
|
21.8
|
1.0
|
C
|
C:GLU5136
|
3.4
|
20.5
|
1.0
|
C
|
C:ILE5158
|
3.4
|
18.8
|
1.0
|
CG
|
C:ASP5157
|
3.5
|
23.4
|
1.0
|
CG
|
C:ASP5240
|
3.5
|
20.1
|
1.0
|
OD1
|
C:ASP5196
|
3.7
|
22.5
|
1.0
|
N
|
C:ILE5158
|
4.0
|
19.2
|
1.0
|
O
|
C:HOH2068
|
4.0
|
21.9
|
1.0
|
CB
|
C:ASP5240
|
4.0
|
18.5
|
1.0
|
OD2
|
C:ASP5157
|
4.1
|
22.8
|
1.0
|
CA
|
C:GLU5136
|
4.2
|
19.9
|
1.0
|
C
|
C:ASP5157
|
4.2
|
20.5
|
1.0
|
N
|
C:GLY5137
|
4.3
|
19.3
|
1.0
|
CA
|
C:ILE5158
|
4.3
|
17.9
|
1.0
|
N
|
C:MSE5159
|
4.4
|
19.4
|
1.0
|
CA
|
C:MSE5159
|
4.4
|
19.7
|
1.0
|
CA
|
C:GLY5137
|
4.4
|
18.4
|
1.0
|
ND2
|
C:ASN5244
|
4.4
|
13.2
|
1.0
|
CB
|
C:MSE5159
|
4.5
|
19.7
|
1.0
|
OD1
|
C:ASP5240
|
4.5
|
19.7
|
1.0
|
CB
|
C:GLU5136
|
4.5
|
19.7
|
1.0
|
O
|
C:ASP5157
|
4.6
|
21.4
|
1.0
|
C
|
C:GLY5137
|
4.6
|
18.8
|
1.0
|
CB
|
C:ASP5157
|
4.7
|
21.6
|
1.0
|
OE1
|
C:GLU5194
|
4.7
|
21.4
|
1.0
|
CA
|
C:ASP5157
|
4.7
|
21.2
|
1.0
|
CB
|
C:ASP5196
|
4.7
|
21.6
|
1.0
|
O
|
C:GLY5137
|
4.8
|
19.4
|
1.0
|
OH
|
C:TYR5133
|
4.9
|
19.3
|
1.0
|
CG
|
C:LYS5138
|
4.9
|
19.1
|
1.0
|
CG
|
C:MSE5159
|
4.9
|
25.5
|
1.0
|
|
Calcium binding site 8 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 8 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca6368
b:22.3
occ:1.00
|
O
|
C:ILE5180
|
2.3
|
23.7
|
1.0
|
OD1
|
C:ASP5172
|
2.3
|
29.0
|
1.0
|
O
|
C:THR5175
|
2.3
|
31.4
|
1.0
|
O
|
C:HOH2083
|
2.3
|
20.8
|
1.0
|
O
|
C:SER5173
|
2.4
|
22.7
|
1.0
|
OD1
|
C:ASP5178
|
2.4
|
22.4
|
1.0
|
CG
|
C:ASP5178
|
3.4
|
21.7
|
1.0
|
CG
|
C:ASP5172
|
3.4
|
31.3
|
1.0
|
C
|
C:ILE5180
|
3.5
|
22.7
|
1.0
|
C
|
C:THR5175
|
3.5
|
35.5
|
1.0
|
C
|
C:SER5173
|
3.6
|
22.5
|
1.0
|
OD2
|
C:ASP5178
|
3.6
|
22.5
|
1.0
|
N
|
C:THR5175
|
3.9
|
32.7
|
1.0
|
OD2
|
C:ASP5172
|
4.0
|
35.1
|
1.0
|
N
|
C:ILE5180
|
4.0
|
20.5
|
1.0
|
N
|
C:SER5173
|
4.1
|
24.9
|
1.0
|
C
|
C:ASP5172
|
4.1
|
25.7
|
1.0
|
C
|
C:GLY5174
|
4.1
|
26.3
|
1.0
|
CA
|
C:ILE5180
|
4.2
|
21.4
|
1.0
|
CA
|
C:THR5175
|
4.2
|
32.2
|
1.0
|
O
|
C:ASP5172
|
4.4
|
22.0
|
1.0
|
CB
|
C:ILE5180
|
4.4
|
21.9
|
1.0
|
CA
|
C:SER5173
|
4.5
|
23.6
|
1.0
|
N
|
C:VAL5176
|
4.5
|
34.3
|
1.0
|
N
|
C:GLY5174
|
4.5
|
24.9
|
1.0
|
N
|
C:THR5181
|
4.5
|
19.7
|
1.0
|
O
|
C:GLY5174
|
4.5
|
29.7
|
1.0
|
CA
|
C:GLY5174
|
4.6
|
25.2
|
1.0
|
CA
|
C:ASP5172
|
4.6
|
25.9
|
1.0
|
CB
|
C:ASP5172
|
4.6
|
26.8
|
1.0
|
CB
|
C:THR5175
|
4.6
|
39.2
|
1.0
|
CA
|
C:VAL5176
|
4.6
|
37.1
|
1.0
|
CA
|
C:THR5181
|
4.7
|
20.1
|
1.0
|
N
|
C:ASP5178
|
4.7
|
23.0
|
1.0
|
CB
|
C:ASP5178
|
4.7
|
20.2
|
1.0
|
N
|
C:ASN5179
|
4.8
|
16.9
|
1.0
|
OG
|
C:SER5173
|
4.8
|
24.4
|
1.0
|
O
|
C:ARG5344
|
4.8
|
22.3
|
1.0
|
CB
|
C:THR5181
|
4.9
|
19.1
|
1.0
|
N
|
C:GLY5177
|
4.9
|
30.5
|
1.0
|
C
|
C:VAL5176
|
5.0
|
35.6
|
1.0
|
|
Calcium binding site 9 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 9 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca6369
b:24.2
occ:1.00
|
OD2
|
C:ASP5343
|
2.2
|
22.7
|
1.0
|
O
|
C:HOH2128
|
2.4
|
23.2
|
1.0
|
O
|
C:THR5258
|
2.4
|
25.3
|
1.0
|
O
|
A:HOH2027
|
2.4
|
26.1
|
1.0
|
OD2
|
C:ASP5296
|
2.5
|
27.9
|
1.0
|
OD2
|
C:ASP5256
|
2.5
|
23.4
|
1.0
|
OD1
|
C:ASP5256
|
2.6
|
27.9
|
1.0
|
CG
|
C:ASP5256
|
2.9
|
24.6
|
1.0
|
CG
|
C:ASP5343
|
3.4
|
21.3
|
1.0
|
CG
|
C:ASP5296
|
3.5
|
27.8
|
1.0
|
C
|
C:THR5258
|
3.6
|
27.7
|
1.0
|
OD1
|
C:ASP5296
|
3.8
|
29.6
|
1.0
|
O
|
A:HOH2024
|
3.9
|
24.6
|
1.0
|
CB
|
C:ASP5343
|
4.0
|
20.6
|
1.0
|
ND2
|
C:ASN5347
|
4.1
|
20.7
|
1.0
|
OD1
|
C:ASP5343
|
4.4
|
20.9
|
1.0
|
N
|
C:THR5258
|
4.4
|
25.1
|
1.0
|
OD1
|
A:ASN5081
|
4.4
|
34.9
|
1.0
|
CB
|
C:ASP5256
|
4.4
|
22.9
|
1.0
|
N
|
C:LEU5259
|
4.5
|
24.9
|
1.0
|
CA
|
C:THR5258
|
4.5
|
25.9
|
1.0
|
CA
|
C:LEU5259
|
4.5
|
25.1
|
1.0
|
ND2
|
A:ASN5081
|
4.6
|
29.1
|
1.0
|
CB
|
C:LEU5259
|
4.7
|
22.4
|
1.0
|
O
|
A:HOH2025
|
4.7
|
23.4
|
1.0
|
CB
|
C:ASP5296
|
4.8
|
28.6
|
1.0
|
CB
|
C:THR5258
|
4.8
|
27.2
|
1.0
|
CD1
|
C:LEU5259
|
5.0
|
19.8
|
1.0
|
OD2
|
C:ASP5294
|
5.0
|
21.9
|
1.0
|
CG
|
A:ASN5081
|
5.0
|
30.4
|
1.0
|
|
Calcium binding site 10 out
of 13 in 2yn3
Go back to
Calcium Binding Sites List in 2yn3
Calcium binding site 10 out
of 13 in the Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structural Insight Into the Giant Calcium-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca6370
b:60.7
occ:1.00
|
O
|
C:HOH2138
|
2.3
|
53.6
|
1.0
|
OD1
|
C:ASP5278
|
2.4
|
49.9
|
1.0
|
OD1
|
C:ASP5271
|
2.5
|
55.4
|
1.0
|
O
|
C:VAL5280
|
2.5
|
37.8
|
1.0
|
O
|
C:ASN5272
|
2.6
|
54.9
|
1.0
|
N
|
C:ASP5276
|
3.0
|
89.8
|
1.0
|
CG
|
C:ASP5278
|
3.5
|
50.3
|
1.0
|
C
|
C:VAL5280
|
3.5
|
35.6
|
1.0
|
N
|
C:ASN5272
|
3.6
|
61.3
|
1.0
|
C
|
C:ASN5272
|
3.6
|
56.1
|
1.0
|
CG
|
C:ASP5271
|
3.6
|
52.8
|
1.0
|
N
|
C:VAL5280
|
3.7
|
37.4
|
1.0
|
C
|
C:ASP5271
|
3.8
|
57.9
|
1.0
|
CB
|
C:VAL5280
|
3.8
|
33.2
|
1.0
|
CA
|
C:ASP5276
|
3.9
|
95.0
|
1.0
|
CA
|
C:VAL5280
|
3.9
|
34.0
|
1.0
|
OD2
|
C:ASP5278
|
4.0
|
52.1
|
1.0
|
C
|
C:ASP5276
|
4.0
|
91.5
|
1.0
|
CA
|
C:ASN5272
|
4.0
|
64.4
|
1.0
|
O
|
C:ASP5271
|
4.1
|
58.3
|
1.0
|
N
|
C:SER5277
|
4.1
|
86.8
|
1.0
|
N
|
C:ASP5278
|
4.2
|
58.9
|
1.0
|
CA
|
C:ASP5271
|
4.3
|
53.2
|
1.0
|
OD2
|
C:ASP5271
|
4.4
|
56.6
|
1.0
|
O
|
C:ASP5276
|
4.5
|
92.4
|
1.0
|
CB
|
C:ASP5271
|
4.6
|
55.6
|
1.0
|
N
|
C:ASN5279
|
4.6
|
44.2
|
1.0
|
N
|
C:THR5281
|
4.7
|
34.9
|
1.0
|
CG1
|
C:VAL5280
|
4.7
|
31.0
|
1.0
|
CB
|
C:ASP5278
|
4.8
|
53.5
|
1.0
|
C
|
C:ASN5279
|
4.8
|
40.0
|
1.0
|
CG2
|
C:VAL5280
|
4.8
|
30.9
|
1.0
|
CA
|
C:ASP5278
|
4.9
|
53.2
|
1.0
|
C
|
C:ASP5278
|
4.9
|
48.2
|
1.0
|
CA
|
C:SER5277
|
5.0
|
79.1
|
1.0
|
|
Reference:
M.H.Griessl,
B.Schmid,
K.Kassler,
C.Braunsmann,
R.Ritter,
B.Barlag,
Y.Stierhof,
K.U.Sturm,
C.Danzer,
C.Wagner,
T.E.Schaffer,
H.Sticht,
M.Hensel,
Y.A.Muller.
Structural Insight Into the Giant Ca(2+)-Binding Adhesin Siie: Implications For the Adhesion of Salmonella Enterica to Polarized Epithelial Cells. Structure V. 21 741 2013.
ISSN: ISSN 0969-2126
PubMed: 23562396
DOI: 10.1016/J.STR.2013.02.020
Page generated: Fri Jul 12 19:34:21 2024
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