Calcium in PDB 2yz4: The Neutron Structure of Concanavalin A at 2.2 Angstroms

The structure of The Neutron Structure of Concanavalin A at 2.2 Angstroms also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Calcium atom in the The Neutron Structure of Concanavalin A at 2.2 Angstroms (pdb code 2yz4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Neutron Structure of Concanavalin A at 2.2 Angstroms, PDB code: 2yz4:

Calcium binding site 1 out of 1 in the The Neutron Structure of Concanavalin A at 2.2 Angstroms


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Neutron Structure of Concanavalin A at 2.2 Angstroms within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:21.7 occ:1.00 OD1 A:ASN14 2.3 20.6 1.0 O A:TYR12 2.4 20.0 1.0 OD2 A:ASP19 2.4 14.5 1.0 OD1 A:ASP10 2.5 20.6 1.0 OD2 A:ASP10 2.5 19.8 1.0 D2 A:DOD504 2.8 12.8 1.0 CG A:ASP10 2.8 22.4 1.0 O A:DOD521 2.9 49.4 1.0 D2 A:DOD521 2.9 49.0 1.0 D1 A:DOD521 2.9 49.3 1.0 O A:DOD504 2.9 15.1 1.0 D A:ASN14 3.4 19.1 1.0 CG A:ASN14 3.5 21.7 1.0 CG A:ASP19 3.5 13.8 1.0 D1 A:DOD504 3.6 14.5 1.0 C A:TYR12 3.6 19.4 1.0 D A:TYR12 3.8 23.1 1.0 HE1 A:HIS24 3.8 14.1 1.0 HB2 A:ASN14 3.8 22.5 1.0 HB3 A:TYR12 3.8 17.6 1.0 OD1 A:ASP19 4.0 7.3 1.0 N A:ASN14 4.0 22.5 1.0 HA A:ARG228 4.1 17.4 1.0 HA A:PRO13 4.1 20.1 1.0 HB2 A:ARG228 4.1 15.6 1.0 CB A:ASN14 4.2 22.1 1.0 HD1 A:TYR12 4.2 16.5 1.0 MN A:MN500 4.2 1.0 1.0 HD11 A:ILE17 4.3 26.5 1.0 D2 A:DOD506 4.3 15.5 1.0 CB A:ASP10 4.4 23.1 1.0 N A:TYR12 4.4 20.5 1.0 CA A:TYR12 4.4 19.9 1.0 ND2 A:ASN14 4.5 22.6 1.0 N A:PRO13 4.6 21.2 1.0 DD21 A:ASN14 4.6 21.3 1.0 CE1 A:HIS24 4.6 14.6 1.0 CA A:PRO13 4.6 21.5 1.0 CB A:TYR12 4.6 17.9 1.0 O A:ASP208 4.7 15.1 1.0 C A:PRO13 4.7 21.9 1.0 CA A:ASN14 4.7 23.4 1.0 OD1 A:ASP208 4.8 14.7 1.0 CB A:ASP19 4.8 16.7 1.0 HB2 A:ASP10 4.8 23.6 1.0 HB3 A:ASP10 4.8 23.7 1.0 O A:DOD506 4.8 16.8 1.0 CB A:ARG228 4.9 16.3 1.0 HB3 A:ARG228 4.9 17.6 1.0 O A:ARG228 4.9 16.8 1.0 HB3 A:ASP19 4.9 17.4 1.0 NE2 A:HIS24 4.9 12.6 1.0 HB2 A:ASP19 4.9 18.9 1.0 CA A:ARG228 4.9 16.9 1.0 HD23 A:LEU230 5.0 19.2 1.0

H.U.Ahmed, M.P.Blakeley, M.Cianci, D.W.Cruickshank, J.A.Hubbard, J.R.Helliwell. The Determination of Protonation States in Proteins. Acta Crystallogr.,Sect.D V. 63 906 2007.
ISSN: ISSN 0907-4449
PubMed: 17642517
DOI: 10.1107/S0907444907029976