Atomistry » Calcium » PDB 2yi1-2z8s » 2z5g
Atomistry »
  Calcium »
    PDB 2yi1-2z8s »
      2z5g »

Calcium in PDB 2z5g: Crystal Structure of T1 Lipase F16L Mutant

Enzymatic activity of Crystal Structure of T1 Lipase F16L Mutant

All present enzymatic activity of Crystal Structure of T1 Lipase F16L Mutant:
3.1.1.3;

Protein crystallography data

The structure of Crystal Structure of T1 Lipase F16L Mutant, PDB code: 2z5g was solved by H.Matsumura, T.Yamamoto, T.Inoue, Y.Kai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.25 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 117.784, 81.111, 99.475, 90.00, 96.90, 90.00
R / Rfree (%) 19.6 / 21.2

Other elements in 2z5g:

The structure of Crystal Structure of T1 Lipase F16L Mutant also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Zinc (Zn) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of T1 Lipase F16L Mutant (pdb code 2z5g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of T1 Lipase F16L Mutant, PDB code: 2z5g:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 2z5g

Go back to Calcium Binding Sites List in 2z5g
Calcium binding site 1 out of 2 in the Crystal Structure of T1 Lipase F16L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of T1 Lipase F16L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2011

b:24.7
occ:1.00
O A:GLY286 2.3 16.2 1.0
OE2 A:GLU360 2.3 13.5 1.0
O A:PRO366 2.3 16.8 1.0
O A:HOH2360 2.4 37.5 1.0
OD2 A:ASP365 2.5 18.4 1.0
CD A:GLU360 3.3 15.4 1.0
C A:GLY286 3.4 16.1 1.0
C A:PRO366 3.5 16.1 1.0
O A:HOH2457 3.6 35.6 1.0
CG A:GLU360 3.6 13.6 1.0
CG A:ASP365 3.7 16.9 1.0
CA A:GLY286 4.1 16.4 1.0
NH2 A:ARG271 4.3 18.1 1.0
N A:ASN288 4.4 15.2 1.0
N A:PRO366 4.4 14.7 1.0
N A:ASN367 4.4 17.1 1.0
OE1 A:GLU360 4.4 14.8 1.0
N A:MET287 4.4 16.2 1.0
C A:MET287 4.4 15.6 1.0
CB A:ASN367 4.5 17.6 1.0
CA A:ASN367 4.5 18.2 1.0
CA A:PRO366 4.5 16.3 1.0
CB A:ASP365 4.5 15.4 1.0
OD1 A:ASP365 4.5 18.4 1.0
O A:HOH2473 4.6 43.8 1.0
OD2 A:ASP357 4.6 17.7 1.0
O A:HOH2387 4.6 32.2 1.0
CA A:MET287 4.6 15.8 1.0
C A:ASP365 4.7 14.6 1.0
CG A:PRO366 4.7 18.4 1.0
CD A:PRO366 4.7 16.7 1.0
O A:HOH2446 4.8 36.1 1.0
O A:MET287 4.9 16.5 1.0
CA A:ASN288 4.9 15.2 1.0
O A:ASP365 4.9 14.3 1.0

Calcium binding site 2 out of 2 in 2z5g

Go back to Calcium Binding Sites List in 2z5g
Calcium binding site 2 out of 2 in the Crystal Structure of T1 Lipase F16L Mutant


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of T1 Lipase F16L Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2012

b:27.4
occ:1.00
O B:PRO366 2.3 21.7 1.0
O B:GLY286 2.3 16.2 1.0
OE2 B:GLU360 2.4 19.4 1.0
OD2 B:ASP365 2.4 22.3 1.0
O B:HOH2390 2.7 46.7 1.0
O B:HOH2520 2.7 50.9 1.0
CD B:GLU360 3.4 17.9 1.0
C B:GLY286 3.4 17.2 1.0
C B:PRO366 3.5 21.6 1.0
CG B:ASP365 3.6 21.0 1.0
CG B:GLU360 3.7 17.2 1.0
CA B:GLY286 4.1 18.6 1.0
NH2 B:ARG271 4.2 16.6 1.0
N B:PRO366 4.3 19.2 1.0
OD1 B:ASP365 4.4 22.2 1.0
N B:ASN367 4.4 21.5 1.0
CA B:PRO366 4.4 20.6 1.0
CB B:ASN367 4.5 22.7 1.0
N B:MET287 4.5 16.5 1.0
N B:ASN288 4.5 17.8 1.0
CG B:PRO366 4.5 21.0 1.0
C B:MET287 4.5 16.1 1.0
CA B:ASN367 4.5 22.7 1.0
CB B:ASP365 4.5 19.4 1.0
OE1 B:GLU360 4.5 17.8 1.0
O B:HOH2440 4.6 48.3 1.0
C B:ASP365 4.6 18.5 1.0
O B:HOH2419 4.6 38.1 1.0
CD B:PRO366 4.6 20.1 1.0
CA B:MET287 4.7 16.2 1.0
OD2 B:ASP357 4.8 24.9 1.0
O B:ASP365 4.9 19.6 1.0
O B:MET287 4.9 15.1 1.0
O B:HOH2391 4.9 38.6 1.0
CA B:ASN288 5.0 18.9 1.0

Reference:

H.Matsumura, T.Yamamoto, T.C.Leow, T.Mori, A.B.Salleh, M.Basri, T.Inoue, Y.Kai, R.N.Z.R.A.Rahman. Novel Cation-Pi Interaction Revealed By Crystal Structure of Thermoalkalophilic Lipase Proteins V. 70 592 2007.
ISSN: ISSN 0887-3585
PubMed: 17932933
DOI: 10.1002/PROT.21799
Page generated: Sat Dec 12 04:01:08 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy