Calcium in PDB 3l2n: Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution

The structure of Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution, PDB code: 3l2n was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.15 / 2.39
Space group	P 61 2 2
Cell size a, b, c (Å), α, β, γ (°)	81.417, 81.417, 479.685, 90.00, 90.00, 120.00
R / Rfree (%)	18 / 23.3

The binding sites of Calcium atom in the Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution (pdb code 3l2n). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution, PDB code: 3l2n:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca377 b:56.0 occ:1.00 ND1 A:HIS259 2.1 25.6 1.0 ND1 A:HIS166 2.2 33.2 1.0 OE2 A:GLU169 2.4 32.0 1.0 OE1 A:GLU169 2.4 25.6 1.0 CD A:GLU169 2.7 27.4 1.0 O1 A:UNL378 2.8 29.1 1.0 CE1 A:HIS166 3.0 29.7 1.0 CG A:HIS259 3.1 23.4 1.0 CE1 A:HIS259 3.1 28.6 1.0 CB A:HIS259 3.3 23.9 1.0 CG A:HIS166 3.3 27.1 1.0 O A:HOH431 3.8 25.5 1.0 CB A:HIS166 3.8 25.5 1.0 O A:GLY260 4.1 25.7 1.0 CA A:HIS259 4.2 24.2 1.0 NE2 A:HIS166 4.2 26.1 1.0 CG A:GLU169 4.2 28.1 1.0 CD2 A:HIS259 4.2 24.2 1.0 NE2 A:HIS259 4.2 29.9 1.0 N A:GLY260 4.3 23.3 1.0 CD2 A:HIS166 4.4 31.7 1.0 NH1 A:ARG217 4.4 47.9 1.0 OE2 A:GLU335 4.6 37.5 1.0 O4 A:UNL378 4.7 29.1 1.0 OE1 A:GLU335 4.7 31.7 1.0 O A:HOH390 4.7 26.7 1.0 C A:HIS259 4.8 23.8 1.0 N A:HIS166 4.9 25.0 1.0 CB A:GLU169 5.0 23.6 1.0 C A:GLY260 5.0 26.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Carboxypeptidase A (YP_562911.1) From Shewanella Denitrificans Os-217 at 2.39 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca377 b:60.4 occ:1.00 ND1 B:HIS166 2.1 35.0 1.0 ND1 B:HIS259 2.2 26.7 1.0 OE2 B:GLU169 2.3 30.2 1.0 OE1 B:GLU169 2.3 26.1 1.0 O1 B:UNL378 2.6 25.1 1.0 CD B:GLU169 2.6 30.3 1.0 CE1 B:HIS166 2.9 29.5 1.0 CG B:HIS259 3.2 26.5 1.0 CE1 B:HIS259 3.2 25.9 1.0 CG B:HIS166 3.2 27.1 1.0 CB B:HIS259 3.4 22.1 1.0 O B:HOH467 3.7 22.2 1.0 CB B:HIS166 3.7 25.5 1.0 NE2 B:HIS166 4.1 25.1 1.0 O B:GLY260 4.1 24.6 1.0 CG B:GLU169 4.1 24.6 1.0 N B:GLY260 4.2 24.2 1.0 CD2 B:HIS166 4.2 30.1 1.0 CA B:HIS259 4.2 23.9 1.0 NH1 B:ARG217 4.3 44.7 1.0 NE2 B:HIS259 4.3 28.8 1.0 CD2 B:HIS259 4.3 28.4 1.0 O4 B:UNL378 4.4 37.6 1.0 OE1 B:GLU335 4.6 31.9 1.0 OE2 B:GLU335 4.6 42.1 1.0 O B:HOH418 4.7 26.4 1.0 C B:HIS259 4.8 24.9 1.0 N B:HIS166 4.9 25.3 1.0 CA B:HIS166 4.9 25.5 1.0 CB B:GLU169 4.9 23.2 1.0 C B:GLY260 5.0 23.4 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.