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Calcium in PDB 5b7f: Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease

Protein crystallography data

The structure of Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease, PDB code: 5b7f was solved by M.Akter, Y.Higuchi, N.Shibata, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.11 / 1.45
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.513, 88.786, 53.951, 90.00, 94.24, 90.00
R / Rfree (%) 15.3 / 18.1

Other elements in 5b7f:

The structure of Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease also contains other interesting chemical elements:

Copper (Cu) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease (pdb code 5b7f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease, PDB code: 5b7f:

Calcium binding site 1 out of 1 in 5b7f

Go back to Calcium Binding Sites List in 5b7f
Calcium binding site 1 out of 1 in the Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Cueo - the Signal Peptide Was Truncated By HRV3C Protease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca606

b:15.0
occ:1.00
O A:HOH1056 2.4 21.4 1.0
OD2 A:ASP332 2.4 12.8 1.0
O A:HOH1050 2.4 17.0 1.0
O A:HOH1162 2.4 23.9 1.0
O A:HOH980 2.4 19.1 1.0
OD1 A:ASP332 2.6 14.4 1.0
CG A:ASP332 2.8 13.3 1.0
O A:HOH1060 4.2 21.1 1.0
CB A:ASP332 4.3 12.0 1.0
O A:HOH734 4.5 14.3 1.0
O A:HOH1126 4.6 39.2 1.0
O A:HOH809 4.8 29.3 1.0
O A:HOH1129 4.9 36.5 1.0
O A:HOH953 5.0 23.0 1.0

Reference:

M.Akter, C.Inoue, H.Komori, N.Matsuda, T.Sakurai, K.Kataoka, Y.Higuchi, N.Shibata. Biochemical, Spectroscopic and X-Ray Structural Analysis of Deuterated Multicopper Oxidase Cueo Prepared From A New Expression Construct For Neutron Crystallography Acta Crystallogr.,Sect.F V. 72 788 2016.
ISSN: ESSN 2053-230X
PubMed: 27710945
DOI: 10.1107/S2053230X1601400X
Page generated: Sat Dec 12 05:18:27 2020

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