Calcium in PDB 5j7j: uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95

The binding sites of Calcium atom in the uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95 (pdb code 5j7j). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95, PDB code: 5j7j:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca201 b:10.0 occ:1.00 OD1 A:ASP20 2.2 10.0 1.0 OD1 A:ASP24 2.2 10.0 1.0 OD1 A:ASP22 2.3 10.0 1.0 OE2 A:GLU31 2.4 10.0 1.0 O A:THR26 2.4 10.0 1.0 OD2 A:ASP22 2.4 10.0 1.0 OE1 A:GLU31 2.5 10.0 1.0 CG A:ASP22 2.7 10.0 1.0 CD A:GLU31 2.8 10.0 1.0 H A:THR26 2.9 10.0 1.0 CG A:ASP20 3.3 10.0 1.0 CG A:ASP24 3.5 10.0 1.0 C A:THR26 3.5 10.0 1.0 H A:GLY25 3.7 10.0 1.0 N A:THR26 3.8 10.0 1.0 HG1 A:THR26 3.8 10.0 1.0 H A:LYS21 3.8 10.0 1.0 HG1 A:THR28 3.8 10.0 1.0 OD2 A:ASP20 3.9 10.0 1.0 HA A:ILE27 3.9 10.0 1.0 H A:ASP22 3.9 10.0 1.0 HB3 A:ASP24 3.9 10.0 1.0 OG1 A:THR26 3.9 10.0 1.0 H A:ASP24 4.0 10.0 1.0 HA A:ASP20 4.0 10.0 1.0 H A:THR28 4.0 10.0 1.0 HG22 A:THR28 4.1 10.0 1.0 CB A:ASP22 4.2 10.0 1.0 CA A:THR26 4.2 10.0 1.0 CB A:ASP24 4.3 10.0 1.0 CG A:GLU31 4.3 10.0 1.0 OD2 A:ASP24 4.4 10.0 1.0 N A:GLY25 4.4 10.0 1.0 CB A:ASP20 4.5 10.0 1.0 N A:ILE27 4.5 10.0 1.0 HB3 A:ASP22 4.5 10.0 1.0 N A:ASP22 4.6 10.0 1.0 CA A:ILE27 4.7 10.0 1.0 HB2 A:ASP20 4.7 10.0 1.0 HG3 A:GLU31 4.7 10.0 1.0 HG2 A:GLU31 4.7 10.0 1.0 CA A:ASP20 4.7 10.0 1.0 CB A:THR26 4.7 10.0 1.0 N A:LYS21 4.7 10.0 1.0 N A:ASP24 4.8 10.0 1.0 N A:THR28 4.8 10.0 1.0 OG1 A:THR28 4.8 10.0 1.0 HB2 A:ASP22 4.8 10.0 1.0 C A:GLY25 4.9 10.0 1.0 CA A:ASP22 4.9 10.0 1.0 HG21 A:THR28 4.9 10.0 1.0 CG2 A:THR28 4.9 10.0 1.0 CA A:ASP24 4.9 10.0 1.0

Calcium binding site 2 out of 4 in the uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca202 b:10.0 occ:1.00 OD2 A:ASP64 2.2 10.0 1.0 OD1 A:ASP56 2.3 10.0 1.0 OD1 A:ASP58 2.3 10.0 1.0 OE2 A:GLU67 2.4 10.0 1.0 O A:THR62 2.4 10.0 1.0 OE1 A:GLU67 2.4 10.0 1.0 OD1 A:ASN60 2.5 10.0 1.0 OD2 A:ASP58 2.5 10.0 1.0 CD A:GLU67 2.7 10.0 1.0 CG A:ASP58 2.7 10.0 1.0 CG A:ASP64 3.2 10.0 1.0 CG A:ASP56 3.3 10.0 1.0 H A:THR62 3.3 10.0 1.0 C A:THR62 3.5 10.0 1.0 HA A:ASP56 3.6 10.0 1.0 OD1 A:ASP64 3.6 10.0 1.0 CG A:ASN60 3.7 10.0 1.0 HB3 A:ASN60 3.7 10.0 1.0 H A:ASP64 3.8 10.0 1.0 H A:ASP58 3.8 10.0 1.0 HA A:ILE63 3.8 10.0 1.0 H A:ALA57 4.0 10.0 1.0 OD2 A:ASP56 4.0 10.0 1.0 H A:ASN60 4.1 10.0 1.0 HB2 A:ASP56 4.1 10.0 1.0 N A:THR62 4.1 10.0 1.0 CB A:ASP56 4.1 10.0 1.0 H A:GLY61 4.2 10.0 1.0 CG A:GLU67 4.2 10.0 1.0 N A:ASP64 4.2 10.0 1.0 CB A:ASP58 4.2 10.0 1.0 CB A:ASN60 4.2 10.0 1.0 CA A:ASP56 4.4 10.0 1.0 CA A:THR62 4.4 10.0 1.0 CB A:ASP64 4.4 10.0 1.0 N A:ILE63 4.4 10.0 1.0 HB2 A:GLU67 4.5 10.0 1.0 HB A:THR62 4.5 10.0 1.0 CA A:ILE63 4.5 10.0 1.0 HB3 A:ASP64 4.5 10.0 1.0 HG3 A:GLU67 4.6 10.0 1.0 HB3 A:ASP58 4.6 10.0 1.0 N A:ASP58 4.6 10.0 1.0 C A:ILE63 4.7 10.0 1.0 N A:GLY61 4.7 10.0 1.0 ND2 A:ASN60 4.8 10.0 1.0 N A:ALA57 4.8 10.0 1.0 HG2 A:GLU67 4.8 10.0 1.0 HB2 A:ASP58 4.8 10.0 1.0 N A:ASN60 4.8 10.0 1.0 HD22 A:ASN60 4.8 10.0 1.0 CA A:ASP58 5.0 10.0 1.0 CB A:GLU67 5.0 10.0 1.0 CA A:ASN60 5.0 10.0 1.0 CA A:ASP64 5.0 10.0 1.0

Calcium binding site 3 out of 4 in the uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca203 b:10.0 occ:1.00 OD1 A:ASP93 2.2 10.0 1.0 OD1 A:ASP95 2.3 10.0 1.0 OE2 A:GLU104 2.3 10.0 1.0 OE1 A:GLU104 2.4 10.0 1.0 O A:TYR99 2.4 10.0 1.0 OD1 A:ASN97 2.5 10.0 1.0 OD2 A:ASP95 2.6 10.0 1.0 CD A:GLU104 2.7 10.0 1.0 CG A:ASP95 2.7 10.0 1.0 CG A:ASP93 3.0 10.0 1.0 OD2 A:ASP93 3.2 10.0 1.0 CG A:ASN97 3.3 10.0 1.0 HA A:ILE100 3.5 10.0 1.0 HD22 A:ASN97 3.5 10.0 1.0 C A:TYR99 3.6 10.0 1.0 H A:TYR99 3.6 10.0 1.0 H A:ASN97 3.6 10.0 1.0 H A:ASP95 3.6 10.0 1.0 HG13 A:ILE100 3.7 10.0 1.0 HG22 A:ILE100 3.7 10.0 1.0 H A:LYS94 3.7 10.0 1.0 ND2 A:ASN97 3.8 10.0 1.0 H A:GLY96 3.9 10.0 1.0 H A:GLY98 4.0 10.0 1.0 HA A:ASP93 4.1 10.0 1.0 CG A:GLU104 4.2 10.0 1.0 CB A:ASP95 4.2 10.0 1.0 N A:TYR99 4.3 10.0 1.0 CA A:ILE100 4.3 10.0 1.0 N A:ILE100 4.3 10.0 1.0 CB A:ASP93 4.3 10.0 1.0 N A:ASN97 4.4 10.0 1.0 N A:ASP95 4.4 10.0 1.0 CB A:ASN97 4.5 10.0 1.0 CG1 A:ILE100 4.5 10.0 1.0 N A:GLY96 4.5 10.0 1.0 HG2 A:GLU104 4.5 10.0 1.0 CA A:TYR99 4.5 10.0 1.0 CG2 A:ILE100 4.5 10.0 1.0 HB3 A:ASN97 4.6 10.0 1.0 HG3 A:GLU104 4.6 10.0 1.0 HB3 A:ASP95 4.6 10.0 1.0 HD1 A:TYR99 4.6 10.0 1.0 HG12 A:ILE100 4.6 10.0 1.0 N A:LYS94 4.6 10.0 1.0 HD21 A:ASN97 4.7 10.0 1.0 CB A:ILE100 4.7 10.0 1.0 HB2 A:ASP93 4.7 10.0 1.0 CA A:ASP93 4.7 10.0 1.0 CA A:ASP95 4.7 10.0 1.0 N A:GLY98 4.7 10.0 1.0 HB2 A:GLU104 4.8 10.0 1.0 HG21 A:ILE100 4.8 10.0 1.0 HB2 A:ASP95 4.8 10.0 1.0 H A:GLU104 4.9 10.0 1.0 CA A:ASN97 4.9 10.0 1.0 HB1 A:ALA103 5.0 10.0 1.0 C A:ASP95 5.0 10.0 1.0

Calcium binding site 4 out of 4 in the uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of uc(Nmr) Derived Structure of CA2+ Calmodulin Bound to Phosphorylated Psd- 95 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca204 b:10.0 occ:1.00 OD2 A:ASP133 2.2 10.0 1.0 OD1 A:ASP131 2.2 10.0 1.0 OD1 A:ASP129 2.3 10.0 1.0 OE1 A:GLU140 2.3 10.0 1.0 OE2 A:GLU140 2.4 10.0 1.0 O A:GLN135 2.4 10.0 1.0 CD A:GLU140 2.7 10.0 1.0 HA A:ASP129 3.0 10.0 1.0 H A:ASP133 3.2 10.0 1.0 H A:GLN135 3.2 10.0 1.0 C A:GLN135 3.2 10.0 1.0 HB3 A:GLN135 3.3 10.0 1.0 CG A:ASP133 3.4 10.0 1.0 CG A:ASP131 3.4 10.0 1.0 CG A:ASP129 3.5 10.0 1.0 H A:GLY132 3.7 10.0 1.0 N A:GLN135 3.8 10.0 1.0 HA A:VAL136 3.8 10.0 1.0 CA A:GLN135 3.9 10.0 1.0 HB3 A:ASP131 3.9 10.0 1.0 CA A:ASP129 3.9 10.0 1.0 H A:ASP131 4.0 10.0 1.0 N A:ASP133 4.0 10.0 1.0 CB A:GLN135 4.1 10.0 1.0 N A:VAL136 4.1 10.0 1.0 HB3 A:ASP133 4.2 10.0 1.0 CG A:GLU140 4.2 10.0 1.0 CB A:ASP129 4.2 10.0 1.0 CB A:ASP131 4.2 10.0 1.0 OD1 A:ASP133 4.2 10.0 1.0 CB A:ASP133 4.3 10.0 1.0 N A:GLY132 4.3 10.0 1.0 OD2 A:ASP131 4.3 10.0 1.0 H A:GLY134 4.4 10.0 1.0 C A:ASP129 4.4 10.0 1.0 OD2 A:ASP129 4.4 10.0 1.0 HB2 A:ASP129 4.5 10.0 1.0 CA A:VAL136 4.5 10.0 1.0 HG3 A:GLU140 4.5 10.0 1.0 N A:ASP131 4.5 10.0 1.0 O A:ALA128 4.6 10.0 1.0 N A:GLY134 4.6 10.0 1.0 HB2 A:GLN135 4.6 10.0 1.0 CA A:ASP133 4.6 10.0 1.0 HG2 A:GLU140 4.6 10.0 1.0 CA A:ASP131 4.8 10.0 1.0 O A:ASP129 4.8 10.0 1.0 HE21 A:GLN135 4.8 10.0 1.0 H A:ASN137 4.8 10.0 1.0 C A:ASP133 4.8 10.0 1.0 H A:VAL136 4.8 10.0 1.0 HB2 A:GLU140 4.9 10.0 1.0 C A:GLY134 4.9 10.0 1.0 C A:ASP131 4.9 10.0 1.0 HA A:GLN135 4.9 10.0 1.0 N A:ILE130 4.9 10.0 1.0 HB3 A:ASN137 4.9 10.0 1.0 C A:GLY132 5.0 10.0 1.0

D.Chowdhury, M.Turner, T.Patriarchi, A.C.Hergarden, D.Anderson, Y.Zhang, J.Sun, C.Y.Chen, J.B.Ames, J.W.Hell. CA2+/Calmodulin Binding to Psd-95 Mediates Homeostatic Synaptic Scaling Down. Embo J. V. 37 122 2018.
ISSN: ESSN 1460-2075
PubMed: 29118000
DOI: 10.15252/EMBJ.201695829