Calcium in PDB 5jwz: Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E

The structure of Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E, PDB code: 5jwz was solved by A.W.Kositzke, C.M.Bianchetti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.89 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	104.149, 140.181, 116.711, 90.00, 113.92, 90.00
R / Rfree (%)	12.8 / 16.9

The binding sites of Calcium atom in the Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E (pdb code 5jwz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E, PDB code: 5jwz:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca803 b:11.6 occ:1.00 O A:LEU479 2.3 7.3 1.0 O A:HOH1551 2.4 11.9 1.0 O A:HOH987 2.4 16.7 1.0 OD2 A:ASP435 2.5 10.2 1.0 O A:HOH1293 2.5 14.7 1.0 O A:HOH1117 2.5 13.1 1.0 O A:HOH1195 2.6 12.4 1.0 CG A:ASP435 3.4 10.3 1.0 C A:LEU479 3.6 8.5 1.0 OD1 A:ASP435 3.6 11.3 1.0 N A:LEU479 4.1 9.6 1.0 O A:HOH1337 4.1 21.9 1.0 OG A:SER478 4.4 10.2 1.0 OE2 A:GLU567 4.4 13.9 1.0 CA A:LEU479 4.5 9.5 1.0 N A:ASP480 4.5 9.0 1.0 CA A:ASP480 4.5 9.4 1.0 CB A:ASP480 4.5 10.3 1.0 O A:HOH1092 4.6 13.5 1.0 O A:HOH1055 4.7 21.3 1.0 O A:HOH1732 4.7 20.7 1.0 O A:HOH1343 4.7 22.7 1.0 OD1 A:ASP480 4.7 14.3 1.0 O A:VAL526 4.8 10.3 1.0 CG A:ASP480 4.8 12.7 1.0 CB A:ASP435 4.8 8.8 1.0 CD1 A:LEU479 4.8 14.7 1.0 OE1 A:GLU567 4.8 20.5 1.0 O A:HOH1076 5.0 16.4 1.0

Calcium binding site 2 out of 3 in the Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca804 b:16.5 occ:1.00 OD1 A:ASP180 2.3 16.9 1.0 O A:HOH1642 2.4 27.8 1.0 OG A:SER182 2.6 14.5 1.0 CG A:ASP180 3.4 16.8 1.0 CB A:SER182 3.7 13.8 1.0 OD2 A:ASP180 4.0 16.7 1.0 N A:SER182 4.4 12.9 1.0 O A:HOH1073 4.4 37.6 1.0 O A:HOH1052 4.5 24.9 1.0 CA A:SER182 4.6 13.9 1.0 CB A:ASP180 4.6 14.3 1.0 CA A:ASP180 4.7 13.5 1.0 C A:ASP180 4.9 12.1 1.0

Calcium binding site 3 out of 3 in the Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca802 b:13.0 occ:1.00 O B:LEU479 2.3 11.1 1.0 O B:HOH979 2.4 18.0 1.0 O B:HOH1186 2.4 18.2 1.0 O B:HOH1480 2.4 13.7 1.0 OD2 B:ASP435 2.5 13.6 1.0 O B:HOH1202 2.5 15.3 1.0 O B:HOH1146 2.6 16.6 1.0 CG B:ASP435 3.4 12.6 1.0 C B:LEU479 3.6 12.3 1.0 OD1 B:ASP435 3.6 14.3 1.0 N B:LEU479 4.1 10.9 1.0 O B:HOH1499 4.1 27.2 1.0 OG B:SER478 4.3 13.0 1.0 OE2 B:GLU567 4.4 16.0 1.0 CA B:LEU479 4.5 11.8 1.0 N B:ASP480 4.5 11.4 1.0 CA B:ASP480 4.5 11.4 1.0 CB B:ASP480 4.5 13.0 1.0 O B:HOH1214 4.6 16.4 1.0 O B:HOH977 4.6 24.4 1.0 O B:HOH1355 4.7 25.3 1.0 OE1 B:GLU567 4.7 22.3 1.0 O B:HOH1743 4.7 22.6 1.0 OD1 B:ASP480 4.8 15.6 1.0 O B:VAL526 4.8 14.8 1.0 CG B:ASP480 4.8 15.5 1.0 CB B:ASP435 4.8 9.7 1.0 CD1 B:LEU479 4.8 16.8 1.0 CD B:GLU567 4.9 17.9 1.0

A.W.Kositzke, C.M.Bianchetti. Structure of A Putative Xyloglucanase From the Cellulolytic Bacteria Streptomyces Sp. Sirexaa-E, Secreted, Biomass Degradation To Be Published.