Calcium in PDB 5jx2: Crystal Structure of Mglb-2 (TP0684) From Treponema Pallidum

The structure of Crystal Structure of Mglb-2 (TP0684) From Treponema Pallidum, PDB code: 5jx2 was solved by C.A.Brautigam, R.K.Deka, M.V.Norgard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.79 / 2.05
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	77.556, 130.025, 88.250, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 22.6

The binding sites of Calcium atom in the Crystal Structure of Mglb-2 (TP0684) From Treponema Pallidum (pdb code 5jx2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Mglb-2 (TP0684) From Treponema Pallidum, PDB code: 5jx2:

Calcium binding site 1 out of 1 in the Crystal Structure of Mglb-2 (TP0684) From Treponema Pallidum


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Mglb-2 (TP0684) From Treponema Pallidum within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:33.8 occ:1.00 O A:ILE77 2.3 30.3 1.0 OD1 A:ASP71 2.4 38.3 1.0 OD1 A:ASP75 2.4 41.7 1.0 O A:HOH516 2.5 32.2 1.0 OD1 A:ASN73 2.5 40.3 1.0 O A:HOH505 2.5 27.9 1.0 OD2 A:ASP166 2.7 36.0 1.0 CG A:ASP75 3.4 50.3 1.0 C A:ILE77 3.4 31.1 1.0 CG A:ASN73 3.5 39.4 1.0 CG A:ASP71 3.5 36.9 1.0 H A:ASP75 3.5 46.0 1.0 H A:ILE77 3.5 39.3 1.0 CG A:ASP166 3.5 33.2 1.0 HD21 A:ASN73 3.6 42.9 1.0 H A:ASN73 3.6 38.2 1.0 HB A:ILE77 3.6 46.2 1.0 OD1 A:ASP166 3.7 37.3 1.0 OD2 A:ASP75 3.7 38.8 1.0 HA A:ASP71 3.7 43.9 1.0 H A:GLY79 3.8 40.8 1.0 ND2 A:ASN73 3.9 35.7 1.0 HA A:ILE78 4.0 33.9 1.0 H A:GLY74 4.1 54.4 1.0 HA A:LYS164 4.2 34.5 1.0 N A:ILE77 4.2 32.8 1.0 CA A:ILE77 4.2 32.0 1.0 OD2 A:ASP71 4.2 39.7 1.0 O A:LYS164 4.3 33.0 1.0 H A:ARG72 4.3 51.9 1.0 O A:HOH506 4.3 37.8 1.0 N A:ASP75 4.3 38.4 1.0 CB A:ILE77 4.3 38.5 1.0 CA A:ASP71 4.4 36.6 1.0 N A:ASN73 4.4 31.9 1.0 N A:ILE78 4.5 30.4 1.0 CB A:ASP71 4.5 38.0 1.0 N A:GLY79 4.5 34.0 1.0 N A:ARG72 4.5 43.3 1.0 C A:ASP71 4.5 36.8 1.0 HG22 A:ILE77 4.5 36.6 1.0 N A:GLY74 4.5 45.3 1.0 HD13 A:ILE78 4.6 39.7 1.0 CA A:ILE78 4.6 28.2 1.0 CB A:ASP75 4.6 44.1 1.0 HD22 A:ASN73 4.7 42.9 1.0 CB A:ASN73 4.7 41.1 1.0 HB2 A:ASP71 4.7 45.6 1.0 H A:GLY76 4.7 39.6 1.0 O A:ASP163 4.8 40.1 1.0 HB3 A:ASP75 4.9 53.0 1.0 CA A:ASN73 4.9 39.5 1.0 CA A:ASP75 4.9 41.3 1.0 C A:LYS164 5.0 28.1 1.0 CB A:ASP166 5.0 29.7 1.0 CG2 A:ILE77 5.0 30.5 1.0 C A:ASN73 5.0 38.8 1.0 CA A:LYS164 5.0 28.8 1.0

C.A.Brautigam, R.K.Deka, W.Z.Liu, M.V.Norgard. The TP0684 (Mglb-2) Lipoprotein of Treponema Pallidum: A Glucose-Binding Protein with Divergent Topology. Plos One V. 11 61022 2016.
ISSN: ESSN 1932-6203
PubMed: 27536942
DOI: 10.1371/JOURNAL.PONE.0161022