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Calcium in PDB 5n7g: Magi-1 Complexed with A Synthetic PRSK1 Peptide

Enzymatic activity of Magi-1 Complexed with A Synthetic PRSK1 Peptide

All present enzymatic activity of Magi-1 Complexed with A Synthetic PRSK1 Peptide:
2.7.11.1;

Protein crystallography data

The structure of Magi-1 Complexed with A Synthetic PRSK1 Peptide, PDB code: 5n7g was solved by G.Gogl, L.Nyitray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.11 / 2.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 194.930, 60.230, 99.350, 90.00, 98.69, 90.00
R / Rfree (%) 21 / 26.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Magi-1 Complexed with A Synthetic PRSK1 Peptide (pdb code 5n7g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the Magi-1 Complexed with A Synthetic PRSK1 Peptide, PDB code: 5n7g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in 5n7g

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Calcium binding site 1 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca904

b:44.5
occ:1.00
 O A:VAL590 2.5 44.9 1.0
O A:GLY589 2.9 61.4 1.0
OE1 A:GLU592 3.0 24.1 1.0
C A:GLY589 3.3 52.3 1.0
OE2 A:GLU592 3.3 22.5 1.0
CD A:GLU592 3.5 18.2 1.0
C A:VAL590 3.6 37.0 1.0
N A:VAL590 3.8 21.7 1.0
CA A:GLY589 4.0 36.0 1.0
CA A:VAL590 4.2 21.1 1.0
N A:ASP591 4.6 21.0 1.0
CB A:VAL590 4.8 20.3 1.0
N A:GLU592 4.9 18.9 1.0
CA A:ASP591 4.9 39.4 1.0
CG A:GLU592 4.9 17.4 1.0

Calcium binding site 2 out of 9 in 5n7g

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Calcium binding site 2 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca905

b:34.1
occ:1.00
 O A:GLY746 2.4 36.5 1.0
O A:ARG744 2.5 47.3 1.0
OE1 A:GLU786 2.5 52.8 1.0
OE2 A:GLU786 2.7 49.2 1.0
O A:GLY741 2.8 37.5 1.0
CD A:GLU786 2.9 43.3 1.0
C A:GLY746 3.5 45.6 1.0
N A:GLY746 3.5 39.2 1.0
C A:GLY741 3.6 29.6 1.0
C A:ARG744 3.7 28.8 1.0
CA A:GLY746 4.0 48.5 1.0
C A:LYS745 4.0 35.0 1.0
CA A:LYS745 4.2 21.0 1.0
OG1 A:THR747 4.2 45.1 1.0
CA A:VAL742 4.3 29.9 1.0
O A:VAL742 4.3 52.6 1.0
N A:VAL742 4.3 27.0 1.0
N A:LYS745 4.4 20.6 1.0
C A:VAL742 4.4 38.0 1.0
CA A:GLY741 4.4 22.3 1.0
CG A:GLU786 4.4 28.6 1.0
N A:THR747 4.6 42.1 1.0
N A:ARG744 4.7 34.3 1.0
CA A:ARG744 4.8 29.3 1.0
CG A:ARG744 4.9 18.6 1.0
O A:LYS745 4.9 34.8 1.0
CA A:THR747 5.0 37.5 1.0

Calcium binding site 3 out of 9 in 5n7g

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Calcium binding site 3 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca906

b:35.0
occ:1.00
 OG A:SER773 2.5 24.0 1.0
CB A:SER773 3.2 19.4 1.0
CA A:SER773 3.2 14.2 1.0
O A:SER773 3.3 12.3 1.0
C A:SER773 3.7 14.0 1.0
N A:SER773 4.5 20.8 1.0
O A:LYS772 4.9 36.5 1.0

Calcium binding site 4 out of 9 in 5n7g

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Calcium binding site 4 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:49.6
occ:1.00
 NH2 A:ARG823 2.7 56.0 1.0
O A:ASP815 3.2 30.0 1.0
N A:GLY819 3.3 22.8 1.0
CZ A:ARG823 3.5 68.6 1.0
CA A:GLY819 3.6 37.9 1.0
C A:SER816 3.9 9.1 1.0
C A:GLY819 3.9 29.3 1.0
O A:SER816 3.9 9.5 1.0
O A:LYS820 4.0 21.4 1.0
NH1 A:ARG823 4.0 77.2 1.0
N A:MET817 4.1 10.2 1.0
N A:LYS818 4.2 22.7 1.0
CG A:ARG823 4.2 44.2 1.0
O A:GLY819 4.2 17.0 1.0
O A:GLY821 4.3 19.3 1.0
NE A:ARG823 4.3 75.5 1.0
C A:MET817 4.3 10.1 1.0
C A:ASP815 4.4 23.5 1.0
CA A:SER816 4.4 8.7 1.0
CA A:MET817 4.4 9.7 1.0
N A:LYS820 4.5 20.6 1.0
C A:LYS818 4.5 18.9 1.0
CD A:ARG823 4.6 65.3 1.0
CA A:CA909 4.7 34.1 1.0
C A:LYS820 4.8 18.9 1.0
N A:ARG823 4.8 10.4 1.0
C A:GLY821 4.8 20.0 1.0
CG A:LYS818 4.8 12.4 1.0
N A:SER816 4.9 23.6 1.0
CA A:LYS818 4.9 13.8 1.0
O A:MET817 4.9 40.6 1.0
CA A:THR822 5.0 10.9 1.0

Calcium binding site 5 out of 9 in 5n7g

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Calcium binding site 5 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca908

b:76.7
occ:1.00
 OD1 A:ASP524 2.9 64.2 1.0
CG A:ASP524 4.0 60.3 1.0
CA A:ASP524 4.2 25.5 1.0
OG A:SER521 4.3 33.1 1.0
OE2 A:GLU551 4.6 60.8 1.0
C A:ASP524 4.6 37.3 1.0
CB A:ASP524 4.7 25.7 1.0
O A:ASP524 4.7 31.7 1.0
CB A:SER521 4.9 30.1 1.0

Calcium binding site 6 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 6 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca909

b:34.1
occ:1.00
 O A:MET817 2.3 40.6 1.0
OD1 A:ASP861 2.4 19.0 1.0
O A:GLY821 2.4 19.3 1.0
OD2 A:ASP861 2.6 35.5 1.0
O A:GLY819 2.8 17.0 1.0
CG A:ASP861 2.8 21.5 1.0
C A:MET817 3.0 10.1 1.0
CA A:MET817 3.3 9.7 1.0
C A:GLY821 3.6 20.0 1.0
C A:GLY819 3.9 29.3 1.0
N A:LYS818 4.1 22.7 1.0
CB A:MET817 4.1 9.6 1.0
N A:GLY819 4.2 22.8 1.0
OG1 A:THR822 4.2 27.2 1.0
C A:LYS818 4.2 18.9 1.0
CB A:ASP861 4.3 16.8 1.0
N A:GLY821 4.3 14.5 1.0
N A:THR822 4.5 26.7 1.0
CA A:GLY821 4.5 12.9 1.0
C A:LYS820 4.6 18.9 1.0
N A:MET817 4.6 10.2 1.0
CA A:THR822 4.6 10.9 1.0
CA A:LYS818 4.6 13.8 1.0
O A:LYS818 4.6 24.4 1.0
CA A:GLY819 4.6 37.9 1.0
O A:SER816 4.7 9.5 1.0
CA A:CA907 4.7 49.6 1.0
CG A:MET817 4.8 9.4 1.0
N A:LYS820 4.9 20.6 1.0
CB A:THR822 4.9 29.7 1.0
O A:LYS820 4.9 21.4 1.0
CA A:LYS820 5.0 18.6 1.0

Calcium binding site 7 out of 9 in 5n7g

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Calcium binding site 7 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca903

b:89.6
occ:1.00
 OE2 B:GLU786 2.8 0.3 1.0
OE1 B:GLU786 3.3 0.8 1.0
CD B:GLU786 3.4 0.8 1.0
NZ B:LYS745 3.9 88.1 1.0
O B:VAL742 4.2 0.8 1.0
CA B:VAL742 4.4 95.9 1.0
O B:ARG744 4.5 98.2 1.0
CG2 B:VAL742 4.5 94.8 1.0
CD B:LYS745 4.7 98.1 1.0
O B:GLY741 4.7 78.5 1.0
CE B:LYS745 4.7 95.2 1.0
C B:VAL742 4.8 0.7 1.0
CG B:GLU786 4.8 0.2 1.0
N B:GLY746 5.0 96.8 1.0
CB B:VAL742 5.0 95.9 1.0

Calcium binding site 8 out of 9 in 5n7g

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Calcium binding site 8 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca904

b:90.3
occ:1.00
 O B:VAL590 3.1 58.9 1.0
N B:VAL590 3.6 52.3 1.0
C B:GLY589 3.7 56.0 1.0
O B:GLY589 3.9 70.3 1.0
C B:VAL590 4.0 42.4 1.0
CA B:GLY589 4.2 48.9 1.0
CD B:GLU592 4.3 69.0 1.0
CA B:VAL590 4.3 47.8 1.0
CG B:GLU592 4.4 56.4 1.0
OE2 B:GLU592 4.4 77.5 1.0
OE1 B:GLU592 4.6 69.7 1.0
CB B:VAL590 4.7 33.4 1.0

Calcium binding site 9 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 9 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca905

b:38.0
occ:1.00
 O B:GLY821 2.5 38.1 1.0
OD1 B:ASP861 2.5 37.5 1.0
OD2 B:ASP861 2.5 51.8 1.0
O B:GLY819 2.6 57.0 1.0
O B:MET817 2.8 44.4 1.0
CG B:ASP861 2.9 55.3 1.0
C B:GLY821 3.6 45.2 1.0
C B:MET817 3.7 42.5 1.0
C B:GLY819 3.8 60.4 1.0
N B:GLY821 3.9 47.4 1.0
CA B:MET817 4.1 42.3 1.0
C B:LYS820 4.2 55.6 1.0
CA B:GLY821 4.2 37.9 1.0
OG1 B:THR822 4.3 36.2 1.0
CB B:ASP861 4.4 36.5 1.0
N B:GLY819 4.5 43.1 1.0
CA B:LYS820 4.6 53.9 1.0
CB B:MET817 4.6 40.8 1.0
N B:LYS820 4.6 58.1 1.0
N B:THR822 4.7 37.0 1.0
CA B:GLY819 4.7 58.7 1.0
C B:LYS818 4.8 47.8 1.0
N B:LYS818 4.8 44.6 1.0
O B:LYS820 4.8 52.3 1.0
CA B:THR822 5.0 36.5 1.0

Reference:

G.Gogl, B.Biri-Kovacs, A.L.Poti, H.Vadaszi, B.Szeder, A.Bodor, G.Schlosser, A.Acs, L.Turiak, L.Buday, A.Alexa, L.Nyitray, A.Remenyi. Dynamic Control of Rsk Complexes By Phosphoswitch-Based Regulation. Febs J. V. 285 46 2018.
ISSN: ISSN 1742-4658
PubMed: 29083550
DOI: 10.1111/FEBS.14311
Page generated: Mon Jul 15 08:51:12 2024

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