Atomistry » Calcium » PDB 5n31-5nn9 » 5n7g
Atomistry »
  Calcium »
    PDB 5n31-5nn9 »
      5n7g »

Calcium in PDB 5n7g: Magi-1 Complexed with A Synthetic PRSK1 Peptide

Enzymatic activity of Magi-1 Complexed with A Synthetic PRSK1 Peptide

All present enzymatic activity of Magi-1 Complexed with A Synthetic PRSK1 Peptide:
2.7.11.1;

Protein crystallography data

The structure of Magi-1 Complexed with A Synthetic PRSK1 Peptide, PDB code: 5n7g was solved by G.Gogl, L.Nyitray, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.11 / 2.95
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 194.930, 60.230, 99.350, 90.00, 98.69, 90.00
R / Rfree (%) 21 / 26.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Magi-1 Complexed with A Synthetic PRSK1 Peptide (pdb code 5n7g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 9 binding sites of Calcium where determined in the Magi-1 Complexed with A Synthetic PRSK1 Peptide, PDB code: 5n7g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Calcium binding site 1 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 1 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca904

b:44.5
occ:1.00
 O A:VAL590 2.5 44.9 1.0
O A:GLY589 2.9 61.4 1.0
OE1 A:GLU592 3.0 24.1 1.0
C A:GLY589 3.3 52.3 1.0
OE2 A:GLU592 3.3 22.5 1.0
CD A:GLU592 3.5 18.2 1.0
C A:VAL590 3.6 37.0 1.0
N A:VAL590 3.8 21.7 1.0
CA A:GLY589 4.0 36.0 1.0
CA A:VAL590 4.2 21.1 1.0
N A:ASP591 4.6 21.0 1.0
CB A:VAL590 4.8 20.3 1.0
N A:GLU592 4.9 18.9 1.0
CA A:ASP591 4.9 39.4 1.0
CG A:GLU592 4.9 17.4 1.0

Calcium binding site 2 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 2 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca905

b:34.1
occ:1.00
 O A:GLY746 2.4 36.5 1.0
O A:ARG744 2.5 47.3 1.0
OE1 A:GLU786 2.5 52.8 1.0
OE2 A:GLU786 2.7 49.2 1.0
O A:GLY741 2.8 37.5 1.0
CD A:GLU786 2.9 43.3 1.0
C A:GLY746 3.5 45.6 1.0
N A:GLY746 3.5 39.2 1.0
C A:GLY741 3.6 29.6 1.0
C A:ARG744 3.7 28.8 1.0
CA A:GLY746 4.0 48.5 1.0
C A:LYS745 4.0 35.0 1.0
CA A:LYS745 4.2 21.0 1.0
OG1 A:THR747 4.2 45.1 1.0
CA A:VAL742 4.3 29.9 1.0
O A:VAL742 4.3 52.6 1.0
N A:VAL742 4.3 27.0 1.0
N A:LYS745 4.4 20.6 1.0
C A:VAL742 4.4 38.0 1.0
CA A:GLY741 4.4 22.3 1.0
CG A:GLU786 4.4 28.6 1.0
N A:THR747 4.6 42.1 1.0
N A:ARG744 4.7 34.3 1.0
CA A:ARG744 4.8 29.3 1.0
CG A:ARG744 4.9 18.6 1.0
O A:LYS745 4.9 34.8 1.0
CA A:THR747 5.0 37.5 1.0

Calcium binding site 3 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 3 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca906

b:35.0
occ:1.00
 OG A:SER773 2.5 24.0 1.0
CB A:SER773 3.2 19.4 1.0
CA A:SER773 3.2 14.2 1.0
O A:SER773 3.3 12.3 1.0
C A:SER773 3.7 14.0 1.0
N A:SER773 4.5 20.8 1.0
O A:LYS772 4.9 36.5 1.0

Calcium binding site 4 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 4 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca907

b:49.6
occ:1.00
 NH2 A:ARG823 2.7 56.0 1.0
O A:ASP815 3.2 30.0 1.0
N A:GLY819 3.3 22.8 1.0
CZ A:ARG823 3.5 68.6 1.0
CA A:GLY819 3.6 37.9 1.0
C A:SER816 3.9 9.1 1.0
C A:GLY819 3.9 29.3 1.0
O A:SER816 3.9 9.5 1.0
O A:LYS820 4.0 21.4 1.0
NH1 A:ARG823 4.0 77.2 1.0
N A:MET817 4.1 10.2 1.0
N A:LYS818 4.2 22.7 1.0
CG A:ARG823 4.2 44.2 1.0
O A:GLY819 4.2 17.0 1.0
O A:GLY821 4.3 19.3 1.0
NE A:ARG823 4.3 75.5 1.0
C A:MET817 4.3 10.1 1.0
C A:ASP815 4.4 23.5 1.0
CA A:SER816 4.4 8.7 1.0
CA A:MET817 4.4 9.7 1.0
N A:LYS820 4.5 20.6 1.0
C A:LYS818 4.5 18.9 1.0
CD A:ARG823 4.6 65.3 1.0
CA A:CA909 4.7 34.1 1.0
C A:LYS820 4.8 18.9 1.0
N A:ARG823 4.8 10.4 1.0
C A:GLY821 4.8 20.0 1.0
CG A:LYS818 4.8 12.4 1.0
N A:SER816 4.9 23.6 1.0
CA A:LYS818 4.9 13.8 1.0
O A:MET817 4.9 40.6 1.0
CA A:THR822 5.0 10.9 1.0

Calcium binding site 5 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 5 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca908

b:76.7
occ:1.00
 OD1 A:ASP524 2.9 64.2 1.0
CG A:ASP524 4.0 60.3 1.0
CA A:ASP524 4.2 25.5 1.0
OG A:SER521 4.3 33.1 1.0
OE2 A:GLU551 4.6 60.8 1.0
C A:ASP524 4.6 37.3 1.0
CB A:ASP524 4.7 25.7 1.0
O A:ASP524 4.7 31.7 1.0
CB A:SER521 4.9 30.1 1.0

Calcium binding site 6 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 6 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca909

b:34.1
occ:1.00
 O A:MET817 2.3 40.6 1.0
OD1 A:ASP861 2.4 19.0 1.0
O A:GLY821 2.4 19.3 1.0
OD2 A:ASP861 2.6 35.5 1.0
O A:GLY819 2.8 17.0 1.0
CG A:ASP861 2.8 21.5 1.0
C A:MET817 3.0 10.1 1.0
CA A:MET817 3.3 9.7 1.0
C A:GLY821 3.6 20.0 1.0
C A:GLY819 3.9 29.3 1.0
N A:LYS818 4.1 22.7 1.0
CB A:MET817 4.1 9.6 1.0
N A:GLY819 4.2 22.8 1.0
OG1 A:THR822 4.2 27.2 1.0
C A:LYS818 4.2 18.9 1.0
CB A:ASP861 4.3 16.8 1.0
N A:GLY821 4.3 14.5 1.0
N A:THR822 4.5 26.7 1.0
CA A:GLY821 4.5 12.9 1.0
C A:LYS820 4.6 18.9 1.0
N A:MET817 4.6 10.2 1.0
CA A:THR822 4.6 10.9 1.0
CA A:LYS818 4.6 13.8 1.0
O A:LYS818 4.6 24.4 1.0
CA A:GLY819 4.6 37.9 1.0
O A:SER816 4.7 9.5 1.0
CA A:CA907 4.7 49.6 1.0
CG A:MET817 4.8 9.4 1.0
N A:LYS820 4.9 20.6 1.0
CB A:THR822 4.9 29.7 1.0
O A:LYS820 4.9 21.4 1.0
CA A:LYS820 5.0 18.6 1.0

Calcium binding site 7 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 7 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca903

b:89.6
occ:1.00
 OE2 B:GLU786 2.8 0.3 1.0
OE1 B:GLU786 3.3 0.8 1.0
CD B:GLU786 3.4 0.8 1.0
NZ B:LYS745 3.9 88.1 1.0
O B:VAL742 4.2 0.8 1.0
CA B:VAL742 4.4 95.9 1.0
O B:ARG744 4.5 98.2 1.0
CG2 B:VAL742 4.5 94.8 1.0
CD B:LYS745 4.7 98.1 1.0
O B:GLY741 4.7 78.5 1.0
CE B:LYS745 4.7 95.2 1.0
C B:VAL742 4.8 0.7 1.0
CG B:GLU786 4.8 0.2 1.0
N B:GLY746 5.0 96.8 1.0
CB B:VAL742 5.0 95.9 1.0

Calcium binding site 8 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 8 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca904

b:90.3
occ:1.00
 O B:VAL590 3.1 58.9 1.0
N B:VAL590 3.6 52.3 1.0
C B:GLY589 3.7 56.0 1.0
O B:GLY589 3.9 70.3 1.0
C B:VAL590 4.0 42.4 1.0
CA B:GLY589 4.2 48.9 1.0
CD B:GLU592 4.3 69.0 1.0
CA B:VAL590 4.3 47.8 1.0
CG B:GLU592 4.4 56.4 1.0
OE2 B:GLU592 4.4 77.5 1.0
OE1 B:GLU592 4.6 69.7 1.0
CB B:VAL590 4.7 33.4 1.0

Calcium binding site 9 out of 9 in 5n7g

Go back to Calcium Binding Sites List in 5n7g
Calcium binding site 9 out of 9 in the Magi-1 Complexed with A Synthetic PRSK1 Peptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Magi-1 Complexed with A Synthetic PRSK1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca905

b:38.0
occ:1.00
 O B:GLY821 2.5 38.1 1.0
OD1 B:ASP861 2.5 37.5 1.0
OD2 B:ASP861 2.5 51.8 1.0
O B:GLY819 2.6 57.0 1.0
O B:MET817 2.8 44.4 1.0
CG B:ASP861 2.9 55.3 1.0
C B:GLY821 3.6 45.2 1.0
C B:MET817 3.7 42.5 1.0
C B:GLY819 3.8 60.4 1.0
N B:GLY821 3.9 47.4 1.0
CA B:MET817 4.1 42.3 1.0
C B:LYS820 4.2 55.6 1.0
CA B:GLY821 4.2 37.9 1.0
OG1 B:THR822 4.3 36.2 1.0
CB B:ASP861 4.4 36.5 1.0
N B:GLY819 4.5 43.1 1.0
CA B:LYS820 4.6 53.9 1.0
CB B:MET817 4.6 40.8 1.0
N B:LYS820 4.6 58.1 1.0
N B:THR822 4.7 37.0 1.0
CA B:GLY819 4.7 58.7 1.0
C B:LYS818 4.8 47.8 1.0
N B:LYS818 4.8 44.6 1.0
O B:LYS820 4.8 52.3 1.0
CA B:THR822 5.0 36.5 1.0

Reference:

G.Gogl, B.Biri-Kovacs, A.L.Poti, H.Vadaszi, B.Szeder, A.Bodor, G.Schlosser, A.Acs, L.Turiak, L.Buday, A.Alexa, L.Nyitray, A.Remenyi. Dynamic Control of Rsk Complexes By Phosphoswitch-Based Regulation. Febs J. V. 285 46 2018.
ISSN: ISSN 1742-4658
PubMed: 29083550
DOI: 10.1111/FEBS.14311
Page generated: Mon Jul 15 08:51:12 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy