Calcium in PDB 5n97: Structure of the C. Crescentus S-Layer

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 110; Page 12, Binding sites: 111 - 114;

Binding sites:

The binding sites of Calcium atom in the Structure of the C. Crescentus S-Layer (pdb code 5n97). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 114 binding sites of Calcium where determined in the Structure of the C. Crescentus S-Layer, PDB code: 5n97:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9001 b:15.3 occ:1.00 OE2 A:GLU317 2.2 28.9 1.0 O A:GLY315 2.4 21.6 1.0 OD1 A:ASP294 2.6 24.0 1.0 O A:ALA291 2.7 32.4 1.0 O A:GLY290 2.8 20.7 1.0 OE1 A:GLU317 2.9 27.1 1.0 CD A:GLU317 2.9 27.4 1.0 C A:ALA291 3.3 32.9 1.0 CG A:ASP294 3.4 23.3 1.0 C A:GLY315 3.5 22.6 1.0 C A:GLY290 3.6 19.8 1.0 CB A:ASP294 3.7 24.3 1.0 CA A:GLY292 3.8 46.1 1.0 N A:GLY292 3.9 39.8 1.0 N A:GLY290 4.1 15.1 1.0 CA A:ALA291 4.1 29.4 1.0 N A:ALA291 4.1 23.4 1.0 C A:GLY289 4.2 14.4 1.0 CA A:GLY315 4.3 22.0 1.0 CG A:GLU317 4.4 26.6 1.0 CA A:GLY289 4.4 13.1 1.0 OD2 A:ASP294 4.4 21.8 1.0 CA A:GLY290 4.5 17.2 1.0 N A:ILE316 4.5 23.2 1.0 CA A:ILE316 4.6 24.8 1.0 N A:ASP294 4.6 27.2 1.0 N A:THR293 4.7 38.1 1.0 CA A:CA9002 4.7 18.4 1.0 C A:GLY292 4.7 42.7 1.0 O A:GLY289 4.7 14.6 1.0 CA A:ASP294 4.8 23.2 1.0 N A:GLU317 5.0 24.6 1.0

Calcium binding site 2 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9002 b:18.4 occ:1.00 O A:GLY289 2.5 14.6 1.0 O A:ASN266 2.7 35.9 1.0 OD2 A:ASP294 2.7 21.8 1.0 N A:ASN266 2.8 41.3 1.0 OD1 A:ASP294 2.8 24.0 1.0 OD2 A:ASP268 3.0 27.4 1.0 N A:ALA265 3.1 35.1 1.0 OD1 A:ASP268 3.1 29.3 1.0 CG A:ASP294 3.2 23.3 1.0 O A:ALA291 3.2 32.4 1.0 CA A:ALA265 3.2 37.9 1.0 N A:ALA291 3.3 23.4 1.0 CG A:ASP268 3.4 28.4 1.0 C A:GLY289 3.4 14.4 1.0 C A:ALA265 3.5 41.1 1.0 C A:ASN266 3.6 38.6 1.0 C A:GLY290 3.7 19.8 1.0 CA A:ASN266 3.8 39.3 1.0 CA A:GLY290 3.9 17.2 1.0 C A:ALA291 4.0 32.9 1.0 N A:THR264 4.0 28.3 1.0 CA A:ALA291 4.0 29.4 1.0 N A:GLY290 4.1 15.1 1.0 C A:THR264 4.2 36.8 1.0 N A:ASP268 4.5 33.1 1.0 CA A:GLY289 4.5 13.1 1.0 C A:GLY263 4.5 24.9 1.0 O A:GLY290 4.5 20.7 1.0 CB A:ALA291 4.6 30.4 1.0 CA A:GLY263 4.6 21.8 1.0 CA A:THR264 4.6 33.2 1.0 O A:ALA265 4.6 42.3 1.0 CB A:ALA265 4.7 38.7 1.0 OG1 A:THR264 4.7 36.1 1.0 CB A:ASP294 4.7 24.3 1.0 CA A:CA9001 4.7 15.3 1.0 CB A:ASP268 4.7 27.7 1.0 CB A:ASN266 4.8 38.5 1.0 N A:ASN267 4.8 41.7 1.0

Calcium binding site 3 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9003 b:10.7 occ:1.00 OD2 A:ASP259 2.3 10.6 1.0 O A:THR280 2.4 10.4 1.0 OG1 A:THR282 2.4 9.1 1.0 OD1 A:ASP285 2.5 7.2 1.0 O A:THR255 2.5 9.4 1.0 OD2 A:ASP285 2.6 8.0 1.0 O A:GLY257 2.7 9.4 1.0 CG A:ASP285 2.9 7.5 1.0 C A:THR280 3.5 10.3 1.0 CG A:ASP259 3.5 10.5 1.0 C A:GLY257 3.7 9.2 1.0 C A:THR255 3.7 9.8 1.0 CB A:THR282 3.8 9.3 1.0 N A:THR282 3.8 9.2 1.0 N A:GLY257 4.0 9.4 1.0 N A:THR255 4.1 10.8 1.0 CD2 A:LEU254 4.3 13.1 1.0 CA A:THR280 4.3 10.4 1.0 OD1 A:ASP259 4.3 10.9 1.0 C A:THR256 4.3 9.6 1.0 CA A:THR282 4.3 9.1 1.0 CA A:LEU281 4.4 9.7 1.0 CG2 A:THR282 4.4 9.5 1.0 N A:LEU281 4.4 10.1 1.0 CA A:GLY257 4.4 9.2 1.0 N A:ASP259 4.4 8.9 1.0 CB A:ASP285 4.4 7.4 1.0 CB A:LEU254 4.4 12.7 1.0 CB A:ASP259 4.4 10.0 1.0 C A:LEU281 4.5 9.4 1.0 CA A:THR255 4.5 10.1 1.0 CG A:LEU254 4.6 13.2 1.0 N A:THR258 4.6 8.8 1.0 OG1 A:THR255 4.6 10.0 1.0 CA A:THR256 4.6 9.8 1.0 N A:THR256 4.6 9.9 1.0 O A:THR282 4.7 9.2 1.0 CB A:THR280 4.7 10.0 1.0 CA A:THR258 4.7 8.6 1.0 C A:THR282 4.8 8.8 1.0 O A:THR256 4.8 9.2 1.0 C A:LEU254 4.9 11.8 1.0 C A:THR258 4.9 8.6 1.0

Calcium binding site 4 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9004 b:19.1 occ:1.00 O A:LEU532 2.3 25.6 1.0 OD2 A:ASP562 2.4 30.4 1.0 OD1 A:ASP562 2.7 29.8 1.0 CG A:ASP562 2.9 29.0 1.0 C A:LEU532 3.5 26.2 1.0 CA A:THR533 4.1 23.9 1.0 N A:THR533 4.3 25.5 1.0 O A:ALA531 4.3 36.1 1.0 C A:ALA531 4.3 33.6 1.0 O A:THR533 4.4 24.7 1.0 CB A:ASP562 4.4 27.2 1.0 OE2 A:GLU558 4.4 21.0 1.0 C A:THR533 4.5 23.9 1.0 N A:LEU532 4.5 29.9 1.0 CA A:LEU532 4.6 26.8 1.0 O A:GLY530 4.8 40.4 1.0 CA A:ALA531 4.8 33.1 1.0 O A:ALA534 4.9 29.6 1.0

Calcium binding site 5 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9005 b:14.3 occ:1.00 O A:ASP562 2.5 26.2 1.0 OD2 A:ASP586 2.5 15.0 1.0 O A:ALA559 2.7 17.8 1.0 OD1 A:ASP586 2.8 15.4 1.0 CG A:ASP586 3.1 14.9 1.0 C A:ASP562 3.7 23.9 1.0 C A:ALA559 3.9 19.8 1.0 O A:ALA560 4.2 20.2 1.0 N A:ASP562 4.3 23.0 1.0 CA A:ALA559 4.5 19.8 1.0 CA A:ASP562 4.6 24.7 1.0 N A:ASP563 4.6 24.5 1.0 CA A:ASP563 4.6 27.3 1.0 CB A:ASP586 4.6 14.2 1.0 OD1 A:ASP563 4.7 36.7 1.0 C A:ALA560 4.7 20.9 1.0 N A:GLY564 4.9 24.8 1.0 C A:ALA561 4.9 22.9 1.0 N A:ALA560 5.0 19.5 1.0

Calcium binding site 6 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9006 b:20.1 occ:1.00 OD2 A:ASP638 2.2 11.1 1.0 O A:GLY634 2.2 22.6 1.0 OD1 A:ASP656 2.5 12.6 1.0 O A:ALA653 2.5 16.0 1.0 O A:MET651 2.5 22.7 1.0 O A:GLY636 2.7 14.3 1.0 OD2 A:ASP656 2.8 12.5 1.0 CG A:ASP656 3.0 12.4 1.0 CG A:ASP638 3.3 11.0 1.0 C A:GLY634 3.4 21.1 1.0 C A:ALA653 3.7 16.2 1.0 O A:ALA635 3.7 21.2 1.0 C A:MET651 3.7 23.1 1.0 N A:GLY634 3.8 20.8 1.0 C A:ALA635 3.8 19.5 1.0 C A:GLY636 3.9 15.2 1.0 C A:GLY652 3.9 20.8 1.0 N A:ALA653 4.0 18.7 1.0 CB A:ASP638 4.1 11.2 1.0 N A:ASP638 4.1 12.3 1.0 OD1 A:ASP638 4.1 10.4 1.0 O A:GLY652 4.1 20.5 1.0 N A:GLY636 4.2 18.4 1.0 CA A:GLY652 4.2 22.1 1.0 CA A:GLY634 4.2 21.0 1.0 N A:ALA635 4.3 20.1 1.0 CA A:ALA635 4.3 19.5 1.0 C A:GLY633 4.4 20.1 1.0 N A:GLY652 4.4 23.0 1.0 CA A:GLY633 4.5 17.1 1.0 CA A:ALA653 4.5 16.7 1.0 CB A:ASP656 4.5 12.0 1.0 CA A:GLY636 4.5 16.9 1.0 O A:GLY654 4.6 15.3 1.0 CA A:CA9007 4.6 17.5 1.0 N A:GLY654 4.7 16.4 1.0 CA A:ASP638 4.7 11.5 1.0 CA A:MET651 4.8 22.1 1.0 CA A:GLY654 4.8 15.3 1.0 N A:ALA637 4.9 14.7 1.0 C A:GLY654 4.9 14.5 1.0

Calcium binding site 7 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9007 b:17.5 occ:1.00 OD1 A:ASP678 2.3 12.5 1.0 OD2 A:ASP656 2.3 12.5 1.0 O A:ASP675 2.4 15.3 1.0 O A:GLY673 2.5 14.3 1.0 O A:GLY652 2.5 20.5 1.0 O A:GLY654 2.6 15.3 1.0 CG A:ASP678 3.1 12.9 1.0 OD2 A:ASP678 3.3 12.5 1.0 O A:ALA653 3.3 16.0 1.0 CG A:ASP656 3.4 12.4 1.0 C A:ALA653 3.5 16.2 1.0 C A:GLY652 3.6 20.8 1.0 C A:ASP675 3.6 15.7 1.0 C A:GLY673 3.7 14.4 1.0 C A:GLY654 3.7 14.5 1.0 C A:GLY674 3.9 14.9 1.0 CA A:ALA653 3.9 16.7 1.0 N A:GLY654 3.9 16.4 1.0 CB A:ASP656 3.9 12.0 1.0 O A:GLY674 4.1 14.7 1.0 N A:ASP675 4.1 15.2 1.0 N A:ALA653 4.2 18.7 1.0 N A:ASP656 4.3 12.5 1.0 CA A:GLY674 4.3 14.6 1.0 O A:MET651 4.3 22.7 1.0 CA A:GLY654 4.4 15.3 1.0 CA A:ASP675 4.4 15.8 1.0 N A:GLY674 4.5 14.3 1.0 CB A:ASP678 4.5 12.8 1.0 OD1 A:ASP656 4.5 12.6 1.0 C A:MET651 4.6 23.1 1.0 CA A:CA9006 4.6 20.1 1.0 N A:GLY676 4.6 15.0 1.0 CB A:MET651 4.6 21.6 1.0 N A:GLY652 4.8 23.0 1.0 CA A:GLY676 4.8 14.4 1.0 CA A:GLY673 4.8 14.5 1.0 CA A:GLY652 4.8 22.1 1.0 CA A:ASP656 4.8 11.6 1.0 N A:ASP655 4.8 13.7 1.0 O A:GLY676 4.9 14.2 1.0 C A:GLY676 4.9 13.6 1.0

Calcium binding site 8 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9008 b:11.8 occ:1.00 OE2 A:GLU699 2.3 14.4 1.0 O A:GLY697 2.4 17.8 1.0 O A:GLY676 2.5 14.2 1.0 O A:GLY674 2.5 14.7 1.0 OD2 A:ASP678 2.6 12.5 1.0 OE1 A:GLU699 2.7 13.4 1.0 CD A:GLU699 2.9 13.9 1.0 C A:GLY697 3.4 17.6 1.0 C A:GLY676 3.6 13.6 1.0 C A:GLY674 3.7 14.9 1.0 N A:GLY676 3.8 15.0 1.0 C A:ASP675 3.8 15.7 1.0 CG A:ASP678 3.8 12.9 1.0 CA A:GLY697 4.0 17.9 1.0 CA A:ASP675 4.1 15.8 1.0 O A:ASP675 4.2 15.3 1.0 CA A:GLY676 4.3 14.4 1.0 CG A:GLU699 4.3 13.6 1.0 N A:ASP675 4.4 15.2 1.0 N A:PHE698 4.5 17.2 1.0 N A:ASP678 4.6 12.9 1.0 CB A:ASP678 4.6 12.8 1.0 O A:GLY673 4.6 14.3 1.0 N A:THR677 4.7 13.0 1.0 C A:GLY673 4.7 14.4 1.0 OD1 A:ASP678 4.7 12.5 1.0 N A:GLY674 4.8 14.3 1.0 CA A:PHE698 4.9 16.5 1.0 CA A:GLY674 4.9 14.6 1.0 CA A:THR677 4.9 12.9 1.0

Calcium binding site 9 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9009 b:11.9 occ:1.00 O A:GLY783 2.4 11.8 1.0 O A:ALA757 2.4 23.4 1.0 OE1 A:GLU785 2.5 24.5 1.0 OD2 A:ASP762 2.6 20.2 1.0 O A:GLY759 2.7 24.7 1.0 OE2 A:GLU785 3.0 22.9 1.0 CD A:GLU785 3.1 23.1 1.0 C A:GLY783 3.3 12.1 1.0 C A:ALA757 3.6 26.0 1.0 CG A:ASP762 3.7 19.4 1.0 CA A:GLY783 3.8 11.7 1.0 C A:GLY759 3.9 23.9 1.0 C A:THR758 4.2 23.9 1.0 CB A:ASP762 4.3 19.5 1.0 O A:THR758 4.3 23.8 1.0 N A:VAL784 4.5 13.0 1.0 N A:GLY759 4.5 24.2 1.0 CA A:ALA757 4.5 27.3 1.0 N A:THR758 4.5 25.1 1.0 CA A:THR758 4.6 23.6 1.0 CG A:GLU785 4.6 21.3 1.0 CB A:ALA757 4.6 29.4 1.0 OD1 A:ASP762 4.7 18.8 1.0 CA A:THR760 4.7 22.8 1.0 N A:THR760 4.7 24.2 1.0 CA A:GLY759 4.7 23.2 1.0 CA A:VAL784 4.9 13.4 1.0

Calcium binding site 10 out of 114 in the Structure of the C. Crescentus S-Layer


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of the C. Crescentus S-Layer within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca9010 b:30.6 occ:1.00 O A:SER771 2.3 12.1 1.0 O A:THR797 2.4 29.5 1.0 OD1 A:ASN795 2.7 24.6 1.0 OD1 A:ASP793 2.7 15.9 1.0 CD2 A:HIS799 2.7 24.6 1.0 OD2 A:ASP793 2.8 15.7 1.0 CG A:ASP793 3.1 16.1 1.0 CG A:ASN795 3.5 24.6 1.0 C A:SER771 3.5 12.3 1.0 C A:THR797 3.6 26.9 1.0 NE2 A:HIS799 3.6 24.0 1.0 CG A:HIS799 3.7 24.8 1.0 ND2 A:ASN795 3.7 23.3 1.0 CB A:HIS799 4.1 24.9 1.0 OG1 A:THR797 4.3 22.9 1.0 C A:ALA798 4.3 26.3 1.0 N A:HIS799 4.4 25.6 1.0 N A:ALA772 4.4 12.2 1.0 O A:ASN795 4.4 26.3 1.0 CA A:ALA772 4.4 12.2 1.0 CA A:THR797 4.5 25.4 1.0 CA A:SER771 4.5 12.5 1.0 O A:ALA798 4.5 25.1 1.0 N A:ALA798 4.5 26.4 1.0 CB A:ASP793 4.5 16.7 1.0 N A:THR797 4.6 26.8 1.0 CA A:ALA798 4.7 25.9 1.0 CE1 A:HIS799 4.7 24.6 1.0 ND1 A:HIS799 4.7 24.3 1.0 CB A:ASN795 4.8 25.6 1.0 CB A:THR797 4.8 24.1 1.0 C A:ASN795 4.9 28.3 1.0 CA A:HIS799 4.9 24.4 1.0 N A:ASN795 5.0 26.4 1.0

T.A.M.Bharat, D.Kureisaite-Ciziene, G.G.Hardy, E.W.Yu, J.M.Devant, W.J.H.Hagen, Y.V.Brun, J.A.G.Briggs, J.Lowe. Structure of the Hexagonal Surface Layer on Caulobacter Crescentus Cells. Nat Microbiol V. 2 17059 2017.
ISSN: ESSN 2058-5276
PubMed: 28418382
DOI: 10.1038/NMICROBIOL.2017.59