Calcium in PDB 5neu: Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.

The structure of Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B. also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Calcium atom in the Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B. (pdb code 5neu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B., PDB code: 5neu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca601 b:47.8 occ:1.00 OD1 B:ASP199 2.6 52.2 1.0 OE1 B:GLU141 2.6 62.7 1.0 OE1 B:GLU202 2.6 32.6 1.0 O B:PRO201 2.7 61.1 1.0 CD B:GLU141 3.0 53.1 1.0 CD B:GLU202 3.0 41.0 1.0 OD2 B:ASP199 3.1 60.7 1.0 CG B:ASP199 3.2 55.9 1.0 OE2 B:GLU202 3.2 53.9 1.0 ND2 B:ASN197 3.3 65.6 1.0 CG B:GLU141 3.3 55.7 1.0 CG B:ASN197 3.5 66.0 1.0 CB B:GLU141 3.5 50.4 1.0 C B:PRO201 3.7 37.9 1.0 CA B:GLU202 3.7 34.9 1.0 O B:ASP199 3.8 36.6 1.0 OE2 B:GLU141 3.9 24.5 1.0 CB B:ASN197 4.0 65.0 1.0 OD1 B:ASN197 4.0 68.3 1.0 CG B:GLU202 4.1 39.5 1.0 N B:GLU202 4.2 32.0 1.0 O B:VAL140 4.2 56.2 1.0 CB B:GLU202 4.3 25.1 1.0 C B:ASP199 4.5 43.1 1.0 NE2 B:HIS237 4.5 39.9 1.0 CB B:ASP199 4.5 51.2 1.0 CA B:GLU141 4.7 57.2 1.0 C B:GLU202 4.8 35.6 1.0 CD2 B:HIS237 4.8 32.9 1.0 CA B:ASP199 4.9 42.7 1.0 N B:ASP199 4.9 53.5 1.0 O B:THR200 4.9 60.7 1.0

Calcium binding site 2 out of 2 in the Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Localised Reconstruction of Integrin Alpha V Beta 6 Bound to Foot and Mouth Disease Virus O1 Manisa - Pose B. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca602 b:0.6 occ:1.00 O B:LYS317 2.6 0.4 1.0 OD1 B:ASP110 2.6 0.7 1.0 CA B:ASP110 3.0 0.9 1.0 CA B:ASP318 3.0 0.2 1.0 N B:ASP110 3.1 0.6 1.0 O B:ASP109 3.1 0.4 1.0 C B:ASP109 3.2 0.7 1.0 C B:ASP318 3.2 85.2 1.0 OD2 B:ASP109 3.3 0.5 1.0 CG B:ASP109 3.4 0.4 1.0 C B:LYS317 3.4 93.9 1.0 O B:ASP318 3.5 82.2 1.0 CG B:ASP110 3.6 0.7 1.0 N B:ASP318 3.6 0.8 1.0 OD1 B:ASP109 3.8 0.5 1.0 N B:SER319 3.8 82.2 1.0 CB B:ASP110 3.8 0.5 1.0 CB B:ASP109 3.9 0.1 1.0 OG B:SER319 3.9 90.9 1.0 C B:ASP110 4.1 0.0 1.0 CA B:ASP109 4.2 0.1 1.0 CB B:ASP318 4.3 0.4 1.0 CB B:SER319 4.3 82.5 1.0 OD1 B:ASP318 4.3 0.1 1.0 O B:ASP110 4.5 0.6 1.0 CA B:SER319 4.7 85.9 1.0 OD2 B:ASP110 4.7 0.9 1.0 CA B:LYS317 4.8 79.6 1.0 CG B:ASP318 4.8 0.7 1.0

A.Kotecha, Q.Wang, X.Dong, S.L.Ilca, M.Ondiviela, R.Zihe, J.Seago, B.Charleston, E.E.Fry, N.G.A.Abrescia, T.A.Springer, J.T.Huiskonen, D.I.Stuart. Rules of Engagement Between Alpha V Beta 6 Integrin and Foot-and-Mouth Disease Virus. Nat Commun V. 8 15408 2017.
ISSN: ESSN 2041-1723
PubMed: 28534487
DOI: 10.1038/NCOMMS15408