Calcium in PDB 6cno: Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II

Calcium Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Calcium atom in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II (pdb code 6cno). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II, PDB code: 6cno:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 12 in 6cno

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Calcium binding site 1 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca201

b:0.5
occ:1.00
OD2 E:ASP24 2.0 0.1 1.0
CG E:ASP24 2.1 0.1 1.0
OD1 E:ASP24 2.1 0.1 1.0
OE2 E:GLU31 2.2 0.7 1.0
OE1 E:GLU31 2.3 0.7 1.0
OD1 E:ASP20 2.3 0.6 1.0
O E:THR26 2.4 0.9 1.0
OD1 E:ASP22 2.4 0.7 1.0
CD E:GLU31 2.5 0.7 1.0
CG E:ASP20 3.1 0.6 1.0
CG E:ASP22 3.3 0.7 1.0
CB E:ASP24 3.3 0.1 1.0
OD2 E:ASP22 3.4 0.7 1.0
C E:THR26 3.5 0.9 1.0
OD2 E:ASP20 3.8 0.6 1.0
CA E:ASP20 3.9 0.6 1.0
CG E:GLU31 3.9 0.7 1.0
CB E:ASP20 3.9 0.6 1.0
N E:ASP24 4.0 0.1 1.0
CA E:ILE27 4.2 0.2 1.0
CA E:ASP24 4.2 0.1 1.0
N E:ILE27 4.2 0.2 1.0
N E:THR28 4.4 0.8 1.0
CG2 E:THR28 4.4 0.8 1.0
N E:THR26 4.5 0.9 1.0
C E:ASP20 4.6 0.6 1.0
CA E:THR26 4.6 0.9 1.0
OG1 E:THR28 4.6 0.8 1.0
CB E:ASP22 4.7 0.7 1.0
C E:ILE27 4.7 0.2 1.0
CB E:GLU31 4.7 0.7 1.0
N E:ASP22 4.7 0.7 1.0
CG2 E:THR26 4.8 0.9 1.0
N E:LYS21 4.8 0.6 1.0
N E:GLY23 4.9 0.1 1.0
C E:ASP24 4.9 0.1 1.0
O E:PHE19 4.9 0.9 1.0

Calcium binding site 2 out of 12 in 6cno

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Calcium binding site 2 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca202

b:0.9
occ:1.00
OD1 E:ASP58 2.1 0.7 1.0
OD1 E:ASN60 2.3 0.8 1.0
OE2 E:GLU67 2.4 0.4 1.0
OE1 E:GLU67 2.4 0.4 1.0
O E:THR62 2.4 0.8 1.0
OD1 E:ASP56 2.4 0.9 1.0
OD2 E:ASP58 2.5 0.7 1.0
CG E:ASP58 2.6 0.7 1.0
ND2 E:ASN60 2.6 0.8 1.0
CG E:ASN60 2.7 0.8 1.0
CD E:GLU67 2.7 0.4 1.0
CG E:ASP56 3.6 0.9 1.0
C E:THR62 3.6 0.8 1.0
CB E:ASN60 4.0 0.8 1.0
CB E:ASP58 4.0 0.7 1.0
OD2 E:ASP56 4.1 0.9 1.0
CA E:ILE63 4.1 0.6 1.0
N E:ASN60 4.2 0.8 1.0
CG E:GLU67 4.2 0.4 1.0
N E:ASP58 4.3 0.7 1.0
N E:ILE63 4.3 0.6 1.0
N E:THR62 4.6 0.8 1.0
N E:GLY59 4.6 0.4 1.0
CA E:ASP58 4.6 0.7 1.0
CA E:ASN60 4.7 0.8 1.0
N E:ALA57 4.7 0.1 1.0
OD1 E:ASP64 4.7 0.0 1.0
CA E:THR62 4.7 0.8 1.0
CA E:ASP56 4.8 0.9 1.0
CB E:ASP56 4.8 0.9 1.0
N E:ASP64 4.8 0.0 1.0
N E:GLY61 4.9 0.2 1.0
CG1 E:ILE63 4.9 0.6 1.0
C E:ILE63 5.0 0.6 1.0
OG1 E:THR62 5.0 0.8 1.0

Calcium binding site 3 out of 12 in 6cno

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Calcium binding site 3 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca203

b:0.5
occ:1.00
ND2 E:ASN97 2.1 0.8 1.0
O E:TYR99 2.2 0.5 1.0
OD1 E:ASN97 2.2 0.8 1.0
OE2 E:GLU104 2.3 0.5 1.0
OD1 E:ASP95 2.3 0.4 1.0
OE1 E:GLU104 2.4 0.5 1.0
OD1 E:ASP93 2.4 0.8 1.0
CG E:ASN97 2.4 0.8 1.0
CD E:GLU104 2.6 0.5 1.0
CG E:ASP95 3.1 0.4 1.0
C E:TYR99 3.2 0.5 1.0
OD2 E:ASP95 3.2 0.4 1.0
CG E:ASP93 3.4 0.8 1.0
CA E:ASP93 3.8 0.8 1.0
CB E:ASN97 3.8 0.8 1.0
N E:ILE100 4.0 0.5 1.0
CA E:ILE100 4.0 0.5 1.0
CB E:ASP93 4.1 0.8 1.0
CG E:GLU104 4.1 0.5 1.0
CA E:TYR99 4.1 0.5 1.0
N E:TYR99 4.1 0.5 1.0
OD2 E:ASP93 4.3 0.8 1.0
N E:SER101 4.3 0.4 1.0
N E:ASN97 4.3 0.8 1.0
C E:ASP93 4.5 0.8 1.0
N E:LYS94 4.5 0.3 1.0
N E:ASP95 4.5 0.4 1.0
CB E:TYR99 4.5 0.5 1.0
CB E:ASP95 4.5 0.4 1.0
C E:ILE100 4.6 0.5 1.0
CA E:ASN97 4.6 0.8 1.0
O E:PHE92 4.9 0.3 1.0
N E:ASP93 4.9 0.8 1.0
N E:GLY96 4.9 0.2 1.0
CB E:GLU104 5.0 0.5 1.0
CA E:ASP95 5.0 0.4 1.0

Calcium binding site 4 out of 12 in 6cno

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Calcium binding site 4 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca201

b:0.7
occ:1.00
OD2 F:ASP24 1.9 0.5 1.0
CG F:ASP24 2.1 0.5 1.0
OD1 F:ASP24 2.1 0.5 1.0
OE2 F:GLU31 2.2 0.1 1.0
OE1 F:GLU31 2.3 0.1 1.0
OD1 F:ASP20 2.3 0.7 1.0
OD1 F:ASP22 2.4 0.8 1.0
O F:THR26 2.4 0.0 1.0
CD F:GLU31 2.5 0.1 1.0
CG F:ASP20 3.1 0.7 1.0
CG F:ASP22 3.3 0.8 1.0
CB F:ASP24 3.3 0.5 1.0
OD2 F:ASP22 3.4 0.8 1.0
C F:THR26 3.5 0.0 1.0
OD2 F:ASP20 3.8 0.7 1.0
CG F:GLU31 3.9 0.1 1.0
CA F:ASP20 3.9 0.7 1.0
N F:ASP24 4.0 0.5 1.0
CB F:ASP20 4.0 0.7 1.0
CA F:ILE27 4.2 0.6 1.0
CA F:ASP24 4.2 0.5 1.0
N F:ILE27 4.3 0.6 1.0
N F:THR28 4.4 0.8 1.0
CG2 F:THR28 4.4 0.8 1.0
N F:THR26 4.5 0.0 1.0
OG1 F:THR28 4.6 0.8 1.0
CA F:THR26 4.6 0.0 1.0
C F:ASP20 4.6 0.7 1.0
CB F:ASP22 4.7 0.8 1.0
C F:ILE27 4.7 0.6 1.0
CB F:GLU31 4.7 0.1 1.0
N F:ASP22 4.8 0.8 1.0
CG2 F:THR26 4.8 0.0 1.0
N F:LYS21 4.8 0.1 1.0
N F:GLY23 4.9 0.3 1.0
C F:ASP24 4.9 0.5 1.0
O F:PHE19 5.0 0.2 1.0

Calcium binding site 5 out of 12 in 6cno

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Calcium binding site 5 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca202

b:0.6
occ:1.00
OD1 F:ASP58 2.1 0.8 1.0
OD1 F:ASN60 2.3 0.7 1.0
OE2 F:GLU67 2.3 0.7 1.0
OE1 F:GLU67 2.4 0.7 1.0
O F:THR62 2.4 0.7 1.0
OD1 F:ASP56 2.5 0.4 1.0
OD2 F:ASP58 2.5 0.8 1.0
CG F:ASP58 2.6 0.8 1.0
ND2 F:ASN60 2.6 0.7 1.0
CG F:ASN60 2.7 0.7 1.0
CD F:GLU67 2.7 0.7 1.0
CG F:ASP56 3.6 0.4 1.0
C F:THR62 3.6 0.7 1.0
CB F:ASP58 4.0 0.8 1.0
CB F:ASN60 4.0 0.7 1.0
OD2 F:ASP56 4.1 0.4 1.0
CA F:ILE63 4.1 0.1 1.0
CG F:GLU67 4.2 0.7 1.0
N F:ASN60 4.2 0.7 1.0
N F:ASP58 4.3 0.8 1.0
N F:ILE63 4.4 0.1 1.0
N F:THR62 4.6 0.7 1.0
N F:GLY59 4.6 0.1 1.0
CA F:ASP58 4.6 0.8 1.0
CA F:ASN60 4.7 0.7 1.0
N F:ALA57 4.7 0.2 1.0
OD1 F:ASP64 4.7 0.1 1.0
CA F:THR62 4.8 0.7 1.0
CA F:ASP56 4.8 0.4 1.0
CB F:ASP56 4.8 0.4 1.0
N F:ASP64 4.8 0.1 1.0
N F:GLY61 4.9 0.1 1.0
CG1 F:ILE63 4.9 0.1 1.0
C F:ILE63 5.0 0.1 1.0
OG1 F:THR62 5.0 0.7 1.0

Calcium binding site 6 out of 12 in 6cno

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Calcium binding site 6 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca203

b:0.7
occ:1.00
ND2 F:ASN97 2.1 0.5 1.0
O F:TYR99 2.1 0.8 1.0
OD1 F:ASN97 2.2 0.5 1.0
OE2 F:GLU104 2.3 0.2 1.0
OD1 F:ASP95 2.3 0.3 1.0
OE1 F:GLU104 2.3 0.2 1.0
OD1 F:ASP93 2.4 0.8 1.0
CG F:ASN97 2.4 0.5 1.0
CD F:GLU104 2.6 0.2 1.0
CG F:ASP95 3.1 0.3 1.0
C F:TYR99 3.2 0.8 1.0
OD2 F:ASP95 3.3 0.3 1.0
CG F:ASP93 3.4 0.8 1.0
CA F:ASP93 3.8 0.8 1.0
CB F:ASN97 3.8 0.5 1.0
N F:ILE100 4.0 0.8 1.0
CA F:ILE100 4.0 0.8 1.0
CB F:ASP93 4.1 0.8 1.0
CG F:GLU104 4.1 0.2 1.0
CA F:TYR99 4.1 0.8 1.0
N F:TYR99 4.1 0.8 1.0
N F:SER101 4.3 0.9 1.0
OD2 F:ASP93 4.3 0.8 1.0
N F:ASN97 4.4 0.5 1.0
C F:ASP93 4.5 0.8 1.0
CB F:TYR99 4.5 0.8 1.0
N F:LYS94 4.5 0.3 1.0
N F:ASP95 4.5 0.3 1.0
CB F:ASP95 4.5 0.3 1.0
C F:ILE100 4.6 0.8 1.0
CA F:ASN97 4.7 0.5 1.0
O F:PHE92 4.9 0.4 1.0
N F:ASP93 4.9 0.8 1.0
N F:GLY96 5.0 0.9 1.0
CB F:GLU104 5.0 0.2 1.0
CA F:ASP95 5.0 0.3 1.0

Calcium binding site 7 out of 12 in 6cno

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Calcium binding site 7 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca201

b:0.4
occ:1.00
OD2 G:ASP24 2.0 0.5 1.0
CG G:ASP24 2.1 0.5 1.0
OD1 G:ASP24 2.1 0.5 1.0
OE2 G:GLU31 2.3 0.7 1.0
OD1 G:ASP20 2.3 0.8 1.0
OE1 G:GLU31 2.3 0.7 1.0
O G:THR26 2.4 0.5 1.0
OD1 G:ASP22 2.4 0.1 1.0
CD G:GLU31 2.5 0.7 1.0
CG G:ASP20 3.1 0.8 1.0
CG G:ASP22 3.3 0.1 1.0
CB G:ASP24 3.3 0.5 1.0
OD2 G:ASP22 3.4 0.1 1.0
C G:THR26 3.5 0.5 1.0
OD2 G:ASP20 3.8 0.8 1.0
CA G:ASP20 3.9 0.8 1.0
CG G:GLU31 3.9 0.7 1.0
CB G:ASP20 3.9 0.8 1.0
N G:ASP24 4.0 0.5 1.0
CA G:ILE27 4.2 0.4 1.0
CA G:ASP24 4.2 0.5 1.0
N G:ILE27 4.2 0.4 1.0
N G:THR28 4.4 0.9 1.0
CG2 G:THR28 4.4 0.9 1.0
N G:THR26 4.5 0.5 1.0
C G:ASP20 4.6 0.8 1.0
CA G:THR26 4.6 0.5 1.0
OG1 G:THR28 4.6 0.9 1.0
C G:ILE27 4.7 0.4 1.0
CB G:ASP22 4.7 0.1 1.0
CB G:GLU31 4.7 0.7 1.0
N G:ASP22 4.7 0.1 1.0
CG2 G:THR26 4.8 0.5 1.0
N G:LYS21 4.8 0.6 1.0
N G:GLY23 4.9 0.2 1.0
C G:ASP24 4.9 0.5 1.0
O G:PHE19 4.9 0.5 1.0

Calcium binding site 8 out of 12 in 6cno

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Calcium binding site 8 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca202

b:0.6
occ:1.00
OD1 G:ASP58 2.1 0.7 1.0
OD1 G:ASN60 2.3 0.6 1.0
OE2 G:GLU67 2.3 0.7 1.0
OE1 G:GLU67 2.4 0.7 1.0
O G:THR62 2.4 0.1 1.0
OD1 G:ASP56 2.4 0.2 1.0
OD2 G:ASP58 2.5 0.7 1.0
CG G:ASP58 2.6 0.7 1.0
ND2 G:ASN60 2.6 0.6 1.0
CG G:ASN60 2.7 0.6 1.0
CD G:GLU67 2.7 0.7 1.0
CG G:ASP56 3.6 0.2 1.0
C G:THR62 3.6 0.1 1.0
CB G:ASP58 4.0 0.7 1.0
CB G:ASN60 4.0 0.6 1.0
OD2 G:ASP56 4.1 0.2 1.0
CA G:ILE63 4.1 0.7 1.0
N G:ASN60 4.2 0.6 1.0
CG G:GLU67 4.2 0.7 1.0
N G:ASP58 4.2 0.7 1.0
N G:ILE63 4.4 0.7 1.0
N G:GLY59 4.6 0.0 1.0
N G:THR62 4.6 0.1 1.0
CA G:ASP58 4.6 0.7 1.0
CA G:ASN60 4.7 0.6 1.0
N G:ALA57 4.7 1.0 1.0
OD1 G:ASP64 4.7 0.9 1.0
CA G:THR62 4.8 0.1 1.0
CA G:ASP56 4.8 0.2 1.0
CB G:ASP56 4.8 0.2 1.0
N G:ASP64 4.8 0.9 1.0
N G:GLY61 4.9 0.2 1.0
CG1 G:ILE63 5.0 0.7 1.0
C G:ILE63 5.0 0.7 1.0
OG1 G:THR62 5.0 0.1 1.0

Calcium binding site 9 out of 12 in 6cno

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Calcium binding site 9 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Ca203

b:0.7
occ:1.00
ND2 G:ASN97 2.1 0.9 1.0
O G:TYR99 2.2 0.0 1.0
OD1 G:ASN97 2.2 0.9 1.0
OE2 G:GLU104 2.3 0.6 1.0
OD1 G:ASP95 2.3 0.5 1.0
OE1 G:GLU104 2.4 0.6 1.0
OD1 G:ASP93 2.4 0.8 1.0
CG G:ASN97 2.4 0.9 1.0
CD G:GLU104 2.6 0.6 1.0
CG G:ASP95 3.1 0.5 1.0
C G:TYR99 3.2 0.0 1.0
OD2 G:ASP95 3.2 0.5 1.0
CG G:ASP93 3.4 0.8 1.0
CB G:ASN97 3.8 0.9 1.0
CA G:ASP93 3.8 0.8 1.0
N G:ILE100 4.0 0.6 1.0
CA G:ILE100 4.0 0.6 1.0
CB G:ASP93 4.1 0.8 1.0
CG G:GLU104 4.1 0.6 1.0
CA G:TYR99 4.1 0.0 1.0
N G:TYR99 4.1 0.0 1.0
N G:SER101 4.3 0.1 1.0
OD2 G:ASP93 4.3 0.8 1.0
N G:ASN97 4.3 0.9 1.0
CB G:TYR99 4.5 0.0 1.0
C G:ASP93 4.5 0.8 1.0
N G:LYS94 4.5 0.8 1.0
N G:ASP95 4.5 0.5 1.0
CB G:ASP95 4.5 0.5 1.0
C G:ILE100 4.6 0.6 1.0
CA G:ASN97 4.7 0.9 1.0
O G:PHE92 4.9 0.4 1.0
N G:ASP93 4.9 0.8 1.0
N G:GLY96 5.0 0.9 1.0
CB G:GLU104 5.0 0.6 1.0
CA G:ASP95 5.0 0.5 1.0

Calcium binding site 10 out of 12 in 6cno

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Calcium binding site 10 out of 12 in the Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Cryo-Em Structure of the Human SK4/Calmodulin Channel Complex in the CA2+ Bound State II within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ca201

b:0.4
occ:1.00
OD2 H:ASP24 2.0 0.6 1.0
CG H:ASP24 2.1 0.6 1.0
OD1 H:ASP24 2.1 0.6 1.0
OD1 H:ASP20 2.3 0.4 1.0
OE2 H:GLU31 2.3 0.5 1.0
OE1 H:GLU31 2.3 0.5 1.0
O H:THR26 2.4 0.1 1.0
OD1 H:ASP22 2.4 0.1 1.0
CD H:GLU31 2.5 0.5 1.0
CG H:ASP20 3.1 0.4 1.0
CG H:ASP22 3.3 0.1 1.0
CB H:ASP24 3.3 0.6 1.0
OD2 H:ASP22 3.5 0.1 1.0
C H:THR26 3.5 0.1 1.0
OD2 H:ASP20 3.8 0.4 1.0
CA H:ASP20 3.9 0.4 1.0
CB H:ASP20 3.9 0.4 1.0
N H:ASP24 3.9 0.6 1.0
CG H:GLU31 3.9 0.5 1.0
CA H:ILE27 4.2 0.3 1.0
CA H:ASP24 4.2 0.6 1.0
N H:ILE27 4.2 0.3 1.0
N H:THR28 4.4 0.1 1.0
N H:THR26 4.4 0.1 1.0
CG2 H:THR28 4.5 0.1 1.0
C H:ASP20 4.6 0.4 1.0
CA H:THR26 4.6 0.1 1.0
OG1 H:THR28 4.7 0.1 1.0
C H:ILE27 4.7 0.3 1.0
CB H:ASP22 4.7 0.1 1.0
N H:ASP22 4.7 0.1 1.0
CB H:GLU31 4.8 0.5 1.0
CG2 H:THR26 4.8 0.1 1.0
N H:LYS21 4.8 0.1 1.0
N H:GLY23 4.9 0.4 1.0
C H:ASP24 4.9 0.6 1.0
O H:PHE19 4.9 0.6 1.0
N H:ASP20 5.0 0.4 1.0

Reference:

C.H.Lee, R.Mackinnon. Activation Mechanism of A Human Sk-Calmodulin Channel Complex Elucidated By Cryo-Em Structures. Science V. 360 508 2018.
ISSN: ESSN 1095-9203
PubMed: 29724949
DOI: 10.1126/SCIENCE.AAS9466
Page generated: Sat Dec 12 06:01:40 2020

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