Calcium in PDB 6cr0: 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7

Enzymatic activity of 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7

All present enzymatic activity of 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7:
1.5.3.5;

Protein crystallography data

The structure of 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7, PDB code: 6cr0 was solved by D.Deay Iii, S.Lovell, K.P.Battaile, P.Petillo, M.Richter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.52 / 1.55
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 96.282, 96.282, 78.628, 90.00, 90.00, 120.00
R / Rfree (%) 14.9 / 18.5

Calcium Binding Sites:

The binding sites of Calcium atom in the 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7 (pdb code 6cr0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7, PDB code: 6cr0:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 6cr0

Go back to Calcium Binding Sites List in 6cr0
Calcium binding site 1 out of 2 in the 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:23.5
occ:1.00
O A:HOH829 2.3 35.0 1.0
OD1 A:ASP88 2.3 25.8 1.0
O A:HOH697 2.3 35.0 1.0
O A:HOH640 2.4 22.7 1.0
O A:HOH748 2.4 34.5 1.0
OD1 A:ASP86 2.4 23.7 1.0
O A:ASP86 2.5 22.5 1.0
CG A:ASP88 3.3 23.8 1.0
CG A:ASP86 3.3 21.5 1.0
C A:ASP86 3.5 20.1 1.0
OD2 A:ASP88 3.6 25.4 1.0
CA A:ASP86 3.8 20.5 1.0
OD2 A:ASP86 4.1 21.0 1.0
CB A:ASP86 4.1 18.8 1.0
OH A:TYR322 4.4 20.0 1.0
CB A:ASP88 4.6 23.1 1.0
N A:LEU87 4.7 18.7 1.0
C A:LEU87 4.7 23.5 1.0
N A:ASP88 4.7 21.4 1.0
O A:LEU87 4.8 25.8 1.0
CA A:ASP88 4.8 22.2 1.0

Calcium binding site 2 out of 2 in 6cr0

Go back to Calcium Binding Sites List in 6cr0
Calcium binding site 2 out of 2 in the 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of 1.55 A Resolution Structure of (S)-6-Hydroxynicotine Oxidase From Shinella HZN7 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca502

b:28.0
occ:1.00
O A:HOH843 2.3 26.2 1.0
O A:TRP192 2.3 16.6 1.0
O A:HOH677 2.4 27.3 1.0
O A:HOH840 2.4 32.5 1.0
O A:HOH688 2.5 20.0 1.0
O A:HOH653 2.6 20.7 1.0
O A:HOH845 3.2 34.3 1.0
C A:TRP192 3.5 16.5 1.0
CA A:ASP193 4.1 15.5 1.0
N A:ASP193 4.3 15.9 1.0
OE2 A:GLU116 4.3 34.4 1.0
OE1 A:GLU116 4.4 27.1 1.0
CE1 A:HIS187 4.5 17.9 1.0
CB A:TRP192 4.5 14.8 1.0
O A:HOH736 4.6 24.8 1.0
O A:HOH858 4.6 34.9 0.5
OD1 A:ASP193 4.6 17.7 1.0
CA A:TRP192 4.6 14.7 1.0
CD A:GLU116 4.8 35.7 1.0
N A:THR194 4.9 17.7 1.0
CB A:ASP193 4.9 17.3 1.0

Reference:

M.Richter, D.Deay Iii, S.Lovell, K.P.Battaile, P.Petillo, M.Richter. N/A N/A.
Page generated: Sat Dec 12 06:01:47 2020

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