Atomistry » Calcium » PDB 6cmw-6d7o » 6cwj
Atomistry »
  Calcium »
    PDB 6cmw-6d7o »
      6cwj »

Calcium in PDB 6cwj: Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid

Enzymatic activity of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid

All present enzymatic activity of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid:
3.5.2.15;

Protein crystallography data

The structure of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid, PDB code: 6cwj was solved by K.Shi, H.Aihara, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 95.26 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.140, 88.840, 190.510, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid (pdb code 6cwj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid, PDB code: 6cwj:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 6cwj

Go back to Calcium Binding Sites List in 6cwj
Calcium binding site 1 out of 4 in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:29.9
occ:0.57
 O A:ALA345 2.4 33.4 1.0
OE2 A:GLU296 2.5 29.0 1.0
O A:GLN348 2.5 30.1 1.0
O A:PRO350 2.5 26.5 1.0
O A:GLY353 2.6 26.6 1.0
CD A:GLU296 3.1 28.9 1.0
CB A:ALA345 3.2 33.0 1.0
O A:GLY349 3.3 36.9 1.0
C A:GLN348 3.4 32.7 1.0
C A:ALA345 3.4 33.9 1.0
C A:PRO350 3.5 32.5 1.0
C A:GLY353 3.6 27.5 1.0
OE1 A:GLU296 3.6 29.1 1.0
C A:GLY349 3.6 39.1 1.0
N A:GLY353 3.9 27.8 1.0
O A:HOH585 3.9 53.7 1.0
CA A:ALA345 3.9 33.4 1.0
CG A:GLU296 4.0 25.1 1.0
N A:GLN348 4.0 33.6 1.0
N A:GLY352 4.2 30.0 1.0
N A:PRO350 4.2 36.0 1.0
CA A:GLY349 4.2 39.9 1.0
N A:GLY349 4.2 37.2 1.0
CA A:GLN348 4.3 32.6 1.0
N A:ASP351 4.3 35.5 1.0
CA A:GLY353 4.3 26.7 1.0
CA A:ASP351 4.4 36.4 1.0
N A:GLY354 4.4 29.3 1.0
CA A:PRO350 4.4 34.0 1.0
N A:GLU346 4.6 35.5 1.0
CA A:GLY354 4.6 31.5 1.0
C A:ASP351 4.7 33.8 1.0
CB A:GLN348 4.7 30.0 1.0
N A:HIS347 4.8 33.8 1.0
C A:GLY352 4.8 25.6 1.0
N A:ALA345 4.9 32.6 1.0
CA A:GLU346 5.0 33.2 1.0
CA A:GLY352 5.0 24.6 1.0

Calcium binding site 2 out of 4 in 6cwj

Go back to Calcium Binding Sites List in 6cwj
Calcium binding site 2 out of 4 in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca402

b:28.6
occ:0.54
 OE2 B:GLU296 2.4 31.9 1.0
O B:ALA345 2.4 27.6 1.0
O B:GLY353 2.5 30.1 1.0
O B:GLN348 2.5 25.4 1.0
O B:PRO350 2.5 27.6 1.0
CD B:GLU296 3.0 32.2 1.0
CB B:ALA345 3.1 20.8 1.0
O B:GLY349 3.3 34.2 1.0
C B:ALA345 3.4 28.9 1.0
O B:HOH629 3.4 42.9 1.0
C B:GLN348 3.5 25.4 1.0
C B:GLY353 3.5 27.5 1.0
C B:PRO350 3.6 28.3 1.0
OE1 B:GLU296 3.6 32.7 1.0
C B:GLY349 3.7 32.4 1.0
N B:GLY353 3.9 26.4 1.0
CA B:ALA345 3.9 28.2 1.0
CG B:GLU296 3.9 30.4 1.0
N B:GLN348 4.1 29.1 1.0
N B:GLY352 4.1 26.2 1.0
N B:PRO350 4.3 32.7 1.0
CA B:GLY349 4.3 28.7 1.0
N B:GLY349 4.3 26.9 1.0
CA B:GLY353 4.3 25.7 1.0
CA B:GLN348 4.3 28.0 1.0
N B:ASP351 4.3 31.0 1.0
N B:GLY354 4.4 28.5 1.0
CA B:ASP351 4.4 29.6 1.0
O B:HOH561 4.5 26.4 1.0
CA B:GLY354 4.5 27.2 1.0
CA B:PRO350 4.5 30.7 1.0
N B:GLU346 4.6 29.1 1.0
C B:ASP351 4.7 28.2 1.0
O B:HOH626 4.7 44.3 1.0
CB B:GLN348 4.7 24.0 1.0
C B:GLY352 4.7 27.3 1.0
N B:HIS347 4.8 30.9 1.0
N B:ALA345 4.8 25.2 1.0
CA B:GLY352 4.9 28.0 1.0
CA B:GLU346 5.0 29.9 1.0
CB B:GLU296 5.0 26.4 1.0

Calcium binding site 3 out of 4 in 6cwj

Go back to Calcium Binding Sites List in 6cwj
Calcium binding site 3 out of 4 in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca402

b:34.5
occ:0.69
 O C:GLN348 2.3 32.9 1.0
O C:PRO350 2.5 34.8 1.0
OE2 C:GLU296 2.5 30.9 1.0
O C:ALA345 2.5 28.1 1.0
O C:GLY353 2.7 32.1 1.0
O C:GLY349 3.1 29.3 1.0
C C:GLN348 3.2 32.9 1.0
CD C:GLU296 3.2 31.2 1.0
C C:GLY349 3.4 29.1 1.0
CB C:ALA345 3.4 24.3 1.0
C C:PRO350 3.4 33.1 1.0
C C:ALA345 3.6 25.6 1.0
C C:GLY353 3.6 31.9 1.0
OE1 C:GLU296 3.8 31.0 1.0
N C:GLN348 3.9 30.1 1.0
CA C:GLY349 3.9 28.0 1.0
N C:GLY349 3.9 30.6 1.0
O C:HOH585 3.9 39.5 1.0
N C:PRO350 4.0 32.9 1.0
N C:GLY353 4.0 26.3 1.0
CA C:GLN348 4.1 32.8 1.0
CA C:ALA345 4.1 24.1 1.0
CG C:GLU296 4.2 24.1 1.0
N C:ASP351 4.3 33.0 1.0
CA C:PRO350 4.3 31.7 1.0
N C:GLY352 4.3 29.7 1.0
CA C:GLY353 4.4 27.9 1.0
CA C:ASP351 4.4 33.1 1.0
N C:GLY354 4.4 29.9 1.0
CA C:GLY354 4.5 27.8 1.0
O C:HOH579 4.6 37.6 1.0
CB C:GLN348 4.6 28.4 1.0
N C:HIS347 4.7 26.0 1.0
N C:GLU346 4.7 26.6 1.0
C C:ASP351 4.7 30.3 1.0
C C:HIS347 4.9 29.4 1.0
C C:GLY352 5.0 28.0 1.0

Calcium binding site 4 out of 4 in 6cwj

Go back to Calcium Binding Sites List in 6cwj
Calcium binding site 4 out of 4 in the Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica Complexed with 1,3-Acetone Dicarboxylic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca403

b:53.1
occ:0.79
 O D:PRO350 2.4 34.6 1.0
OE2 D:GLU296 2.4 44.7 1.0
O D:GLN348 2.5 35.9 1.0
O D:ALA345 2.5 43.6 1.0
O D:GLY353 2.7 35.1 1.0
CD D:GLU296 3.1 42.1 1.0
O D:GLY349 3.2 33.4 1.0
CB D:ALA345 3.3 36.4 1.0
C D:GLN348 3.4 38.0 1.0
C D:PRO350 3.4 33.5 1.0
C D:ALA345 3.5 40.8 1.0
C D:GLY349 3.6 34.1 1.0
OE1 D:GLU296 3.6 44.0 1.0
C D:GLY353 3.7 33.8 1.0
N D:GLN348 4.0 38.1 1.0
CG D:GLU296 4.0 33.8 1.0
CA D:ALA345 4.0 40.5 1.0
N D:GLY353 4.1 37.6 1.0
N D:PRO350 4.1 35.4 1.0
CA D:GLY349 4.1 34.2 1.0
N D:GLY349 4.2 36.1 1.0
O D:HOH521 4.2 39.3 1.0
CA D:GLN348 4.3 40.1 1.0
N D:ASP351 4.3 35.1 1.0
N D:GLY352 4.3 34.6 1.0
CA D:PRO350 4.3 34.6 1.0
CA D:ASP351 4.4 30.5 1.0
CA D:GLY353 4.5 36.0 1.0
N D:GLY354 4.6 32.6 1.0
CA D:GLY354 4.7 33.9 1.0
N D:GLU346 4.7 39.6 1.0
CB D:GLN348 4.7 40.9 1.0
N D:HIS347 4.7 38.9 1.0
C D:ASP351 4.7 33.0 1.0
N D:ALA345 5.0 38.8 1.0
C D:GLY352 5.0 33.3 1.0

Reference:

K.Shi, S.Cho, B.Asim, J.L.Seffernick, L.P.Wackett, H.Aihara. Crystal Structures of Cyanuric Acid Hydrolase From Moorella Thermoacetica To Be Published.
Page generated: Mon Jul 15 17:29:30 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy