Calcium in PDB 6d04: Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1.

The structure of Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1. also contains other interesting chemical elements:

Iron

(Fe)

4 atoms

The binding sites of Calcium atom in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1. (pdb code 6d04). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1., PDB code: 6d04:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca801 b:36.3 occ:1.00 O A:THR310 2.4 43.2 1.0 OE2 A:GLU465 2.4 34.7 1.0 O A:PHE313 2.5 39.6 1.0 OE1 A:GLU468 2.5 35.6 1.0 OG1 A:THR310 2.7 43.2 1.0 CD A:GLU465 3.1 34.7 1.0 OE1 A:GLU465 3.1 34.7 1.0 C A:PHE313 3.5 39.6 1.0 C A:THR310 3.6 43.2 1.0 CB A:THR310 3.6 43.2 1.0 CD A:GLU468 3.7 35.6 1.0 CA A:PRO314 3.9 39.3 1.0 OG A:SER315 4.2 39.8 1.0 N A:PRO314 4.2 39.3 1.0 CA A:THR310 4.2 43.2 1.0 N A:PHE313 4.2 39.6 1.0 N A:GLY312 4.3 42.7 1.0 OE2 A:GLU468 4.4 35.6 1.0 C A:PRO314 4.4 39.3 1.0 O A:ASP307 4.4 46.7 1.0 N A:SER315 4.5 39.8 1.0 CG A:GLU465 4.5 34.7 1.0 CA A:PHE313 4.5 39.6 1.0 N A:PRO311 4.6 44.2 1.0 CB A:GLU468 4.6 35.6 1.0 CA A:PRO311 4.7 44.2 1.0 CG A:GLU468 4.8 35.6 1.0 C A:PRO311 4.8 44.2 1.0 C A:GLY312 4.8 42.7 1.0 CG2 A:THR310 4.9 43.2 1.0 CB A:ASP307 4.9 46.7 1.0 N A:THR310 5.0 43.2 1.0

Calcium binding site 2 out of 2 in the Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of A Plasmodium Vivax Invasion Complex Essential For Entry Into Human Reticulocytes; Two Molecules of Parasite Ligand, Subclass 1. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:31.9 occ:1.00 OE2 B:GLU465 2.4 32.6 1.0 O B:THR310 2.4 41.2 1.0 OE1 B:GLU468 2.5 34.1 1.0 O B:PHE313 2.5 39.5 1.0 OG1 B:THR310 2.7 41.2 1.0 CD B:GLU465 3.1 32.6 1.0 OE1 B:GLU465 3.1 32.6 1.0 C B:PHE313 3.6 39.5 1.0 C B:THR310 3.6 41.2 1.0 CB B:THR310 3.6 41.2 1.0 CD B:GLU468 3.7 34.1 1.0 CA B:PRO314 4.0 37.9 1.0 OG B:SER315 4.2 38.3 1.0 N B:PRO314 4.2 37.9 1.0 CA B:THR310 4.2 41.2 1.0 N B:PHE313 4.2 39.5 1.0 OE2 B:GLU468 4.3 34.1 1.0 N B:GLY312 4.3 41.5 1.0 O B:ASP307 4.4 43.5 1.0 C B:PRO314 4.4 37.9 1.0 CG B:GLU465 4.5 32.6 1.0 N B:SER315 4.5 38.3 1.0 CA B:PHE313 4.6 39.5 1.0 N B:PRO311 4.6 42.5 1.0 CB B:GLU468 4.6 34.1 1.0 CA B:PRO311 4.7 42.5 1.0 CG B:GLU468 4.7 34.1 1.0 C B:PRO311 4.8 42.5 1.0 C B:GLY312 4.8 41.5 1.0 CB B:ASP307 4.9 43.5 1.0 CG2 B:THR310 4.9 41.2 1.0 N B:THR310 5.0 41.2 1.0

J.Gruszczyk, R.K.Huang, L.J.Chan, S.Menant, C.Hong, J.M.Murphy, Y.F.Mok, M.D.W.Griffin, R.D.Pearson, W.Wong, A.F.Cowman, Z.Yu, W.H.Tham. Cryo-Em Structure of An Essential Plasmodium Vivax Invasion Complex. Nature V. 559 135 2018.
ISSN: ISSN 0028-0836
PubMed: 29950717
DOI: 10.1038/S41586-018-0249-1