Calcium in PDB 6d3w: Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa

The structure of Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa, PDB code: 6d3w was solved by A.Hofmann, M.Cross, S.-Y.Park, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	24.20 / 1.90
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.030, 66.847, 75.263, 90.00, 119.48, 90.00
R / Rfree (%)	17.6 / 21.9

The binding sites of Calcium atom in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa (pdb code 6d3w). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa, PDB code: 6d3w:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca301 b:17.6 occ:1.00 OD2 A:ASP11 2.1 26.7 1.0 O A:ASP13 2.2 20.4 1.0 O A:HOH404 2.3 20.7 1.0 OD1 A:ASP220 2.3 18.0 1.0 O A:HOH426 2.3 22.1 1.0 O A:ACY302 2.3 28.6 1.0 CG A:ASP11 2.9 45.7 1.0 OD1 A:ASP11 3.1 29.2 1.0 CG A:ASP220 3.2 24.1 1.0 C A:ACY302 3.4 28.3 1.0 C A:ASP13 3.4 22.1 1.0 OD2 A:ASP220 3.5 22.1 1.0 N A:ASP13 4.1 22.2 1.0 OD2 A:ASP224 4.1 23.0 1.0 CA A:ASP13 4.1 17.0 1.0 OXT A:ACY302 4.1 27.5 1.0 OG1 A:THR15 4.1 23.2 1.0 CH3 A:ACY302 4.2 26.9 1.0 OG A:SER221 4.3 22.1 1.0 O A:HOH414 4.3 30.2 1.0 OD2 A:ASP14 4.3 30.0 1.0 CB A:ASP11 4.3 24.8 1.0 CB A:ASP13 4.3 23.3 1.0 CB A:ASP14 4.4 23.9 1.0 N A:ASP14 4.4 19.8 1.0 CB A:ASP220 4.5 19.5 1.0 C A:LEU12 4.6 25.2 1.0 N A:THR15 4.6 17.6 1.0 CA A:ASP14 4.7 22.2 1.0 C A:ASP14 4.8 21.0 1.0 N A:LEU12 4.8 17.0 1.0 CG A:ASP14 4.9 43.4 1.0 N A:ASP220 4.9 17.6 1.0

Calcium binding site 2 out of 2 in the Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Chromosomal Trehalose-6-Phosphate Phosphatase From P. Aeruginosa within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca301 b:19.4 occ:1.00 OD2 B:ASP11 2.1 26.1 1.0 O B:ASP13 2.2 18.4 1.0 OD1 B:ASP220 2.3 20.8 1.0 O B:HOH405 2.3 21.2 1.0 O B:HOH421 2.3 22.9 1.0 O B:ACY302 2.4 27.9 1.0 CG B:ASP11 2.9 44.2 1.0 OD1 B:ASP11 3.1 28.0 1.0 CG B:ASP220 3.2 22.5 1.0 C B:ACY302 3.3 27.2 1.0 C B:ASP13 3.4 28.0 1.0 OD2 B:ASP220 3.5 20.0 1.0 CH3 B:ACY302 4.1 26.9 1.0 N B:ASP13 4.1 22.9 1.0 CA B:ASP13 4.1 18.7 1.0 OXT B:ACY302 4.1 26.9 1.0 OD2 B:ASP224 4.1 23.0 1.0 OG1 B:THR15 4.1 24.7 1.0 OG B:SER221 4.3 20.9 1.0 O B:HOH410 4.3 29.4 1.0 OD2 B:ASP14 4.3 30.6 1.0 CB B:ASP11 4.3 24.2 1.0 CB B:ASP13 4.3 23.9 1.0 CB B:ASP14 4.4 21.3 1.0 N B:ASP14 4.4 18.7 1.0 CB B:ASP220 4.6 17.8 1.0 C B:LEU12 4.6 26.1 1.0 N B:THR15 4.7 18.4 1.0 CA B:ASP14 4.7 19.6 1.0 C B:ASP14 4.8 23.7 1.0 N B:LEU12 4.8 16.1 1.0 CG B:ASP14 4.9 38.2 1.0 N B:ASP220 4.9 16.0 1.0

M.Cross, S.Biberacher, S.Y.Park, S.Rajan, P.Korhonen, R.B.Gasser, J.S.Kim, M.J.Coster, A.Hofmann. Trehalose 6-Phosphate Phosphatases of Pseudomonas Aeruginosa. Faseb J. V. 32 5470 2018.
ISSN: ESSN 1530-6860
PubMed: 29688811
DOI: 10.1096/FJ.201800500R