Calcium in PDB 6d5d: Structure of Caldicellulosiruptor Danielii GH48 Module of Glycoside Hydrolase WP_045175321

The structure of Structure of Caldicellulosiruptor Danielii GH48 Module of Glycoside Hydrolase WP_045175321, PDB code: 6d5d was solved by P.M.Alahuhta, V.V.Lunin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	103.08 / 1.90
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	116.014, 57.512, 105.957, 90.00, 103.38, 90.00
R / Rfree (%)	16.3 / 23.1

The binding sites of Calcium atom in the Structure of Caldicellulosiruptor Danielii GH48 Module of Glycoside Hydrolase WP_045175321 (pdb code 6d5d). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structure of Caldicellulosiruptor Danielii GH48 Module of Glycoside Hydrolase WP_045175321, PDB code: 6d5d:

Calcium binding site 1 out of 1 in the Structure of Caldicellulosiruptor Danielii GH48 Module of Glycoside Hydrolase WP_045175321


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Caldicellulosiruptor Danielii GH48 Module of Glycoside Hydrolase WP_045175321 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca703 b:46.3 occ:1.00 OE2 A:GLU198 2.4 23.3 1.0 O A:GLU193 2.4 18.5 1.0 OD2 A:ASP417 2.5 24.5 1.0 O A:HOH943 2.5 32.2 1.0 OE1 A:GLU193 2.7 29.5 1.0 OE1 A:GLU198 3.1 22.9 1.0 CD A:GLU198 3.1 22.0 1.0 CG A:ASP417 3.4 26.7 1.0 C A:GLU193 3.5 17.8 1.0 CB A:ASP417 3.7 22.6 1.0 CD A:GLU193 3.9 30.0 1.0 CB A:GLU193 4.0 23.6 1.0 NH2 A:ARG564 4.0 24.1 1.0 CA A:GLU193 4.0 19.1 1.0 N A:SER195 4.1 16.5 1.0 O A:HOH1104 4.4 47.3 1.0 CB A:SER195 4.4 17.9 1.0 OG A:SER195 4.5 18.1 1.0 N A:GLU194 4.5 18.1 1.0 OD1 A:ASP417 4.5 23.8 1.0 CG A:GLU193 4.6 26.6 1.0 CG A:GLU198 4.6 19.5 1.0 CA A:GLU194 4.8 17.1 1.0 OE2 A:GLU193 4.8 32.4 1.0 CA A:SER195 4.9 15.7 1.0 C A:GLU194 4.9 16.1 1.0 O A:HOH1581 5.0 43.5 1.0

J.M.Conway, J.R.Crosby, A.P.Hren, R.T.Southerland, L.L.Lee, V.V.Lunin, P.M.Alahuhta, M.E.Himmel, Y.J.Bomble, M.W.W.Adams, R.M.Kelly. Novel Multidomain, Multifunctional Glycoside Hydrolases From Highly Lignocellulolytic Caldicellulosiruptor Species Aiche J. 2019.
DOI: 10.1002/AIC.16354