Calcium in PDB 6n28: BEST1 Calcium-Bound Open State

Calcium Binding Sites:

The binding sites of Calcium atom in the BEST1 Calcium-Bound Open State (pdb code 6n28). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the BEST1 Calcium-Bound Open State, PDB code: 6n28:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in 6n28

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Calcium binding site 1 out of 5 in the BEST1 Calcium-Bound Open State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of BEST1 Calcium-Bound Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:30.0
occ:1.00
O A:ASN296 2.2 63.8 1.0
OD2 A:ASP304 2.3 71.2 1.0
O B:ALA10 2.4 69.4 1.0
O A:GLN293 2.5 68.6 1.0
OD2 A:ASP301 2.5 76.6 1.0
OD1 A:ASP304 2.6 71.2 1.0
CG A:ASP304 2.8 71.2 1.0
C A:ASN296 3.4 63.8 1.0
CG A:ASP301 3.5 76.6 1.0
C A:GLN293 3.6 68.6 1.0
C B:ALA10 3.7 69.4 1.0
CB A:ASP301 4.1 76.6 1.0
CA A:PRO297 4.2 61.7 1.0
N A:PRO297 4.2 61.7 1.0
CB A:ASP304 4.3 71.2 1.0
CA A:GLN293 4.3 68.6 1.0
CA A:ASN296 4.3 63.8 1.0
N A:GLY299 4.4 68.9 1.0
N A:ASN296 4.4 63.8 1.0
OD1 A:ASP301 4.5 76.6 1.0
CA B:ALA10 4.5 69.4 1.0
CB A:ASN296 4.5 63.8 1.0
CA A:GLY299 4.6 68.9 1.0
N B:ASP11 4.6 75.5 1.0
O B:VAL9 4.6 68.4 1.0
CG A:GLN293 4.6 68.6 1.0
C A:PRO297 4.7 61.7 1.0
N A:LEU294 4.7 61.1 1.0
CA B:ASP11 4.7 75.5 1.0
O A:GLU292 4.8 70.3 1.0
N A:PHE298 4.8 62.5 1.0
N A:ASP301 4.9 76.6 1.0
CA A:LEU294 5.0 61.1 1.0

Calcium binding site 2 out of 5 in 6n28

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Calcium binding site 2 out of 5 in the BEST1 Calcium-Bound Open State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of BEST1 Calcium-Bound Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca401

b:30.0
occ:1.00
O B:ASN296 2.2 63.8 1.0
OD2 B:ASP304 2.3 71.2 1.0
O C:ALA10 2.4 69.4 1.0
O B:GLN293 2.5 68.6 1.0
OD2 B:ASP301 2.5 76.6 1.0
OD1 B:ASP304 2.6 71.2 1.0
CG B:ASP304 2.8 71.2 1.0
C B:ASN296 3.4 63.8 1.0
CG B:ASP301 3.5 76.6 1.0
C B:GLN293 3.6 68.6 1.0
C C:ALA10 3.7 69.4 1.0
CB B:ASP301 4.1 76.6 1.0
CA B:PRO297 4.2 61.7 1.0
N B:PRO297 4.2 61.7 1.0
CB B:ASP304 4.3 71.2 1.0
CA B:GLN293 4.3 68.6 1.0
CA B:ASN296 4.3 63.8 1.0
N B:GLY299 4.4 68.9 1.0
N B:ASN296 4.4 63.8 1.0
OD1 B:ASP301 4.5 76.6 1.0
CA C:ALA10 4.5 69.4 1.0
CB B:ASN296 4.5 63.8 1.0
CA B:GLY299 4.6 68.9 1.0
N C:ASP11 4.6 75.5 1.0
CG B:GLN293 4.6 68.6 1.0
O C:VAL9 4.6 68.4 1.0
C B:PRO297 4.7 61.7 1.0
N B:LEU294 4.7 61.1 1.0
CA C:ASP11 4.7 75.5 1.0
O B:GLU292 4.8 70.3 1.0
N B:PHE298 4.8 62.5 1.0
N B:ASP301 4.9 76.6 1.0
CA B:LEU294 5.0 61.1 1.0

Calcium binding site 3 out of 5 in 6n28

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Calcium binding site 3 out of 5 in the BEST1 Calcium-Bound Open State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of BEST1 Calcium-Bound Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca401

b:30.0
occ:1.00
O C:ASN296 2.2 63.8 1.0
OD2 C:ASP304 2.3 71.2 1.0
O D:ALA10 2.4 69.4 1.0
O C:GLN293 2.5 68.6 1.0
OD2 C:ASP301 2.5 76.6 1.0
OD1 C:ASP304 2.6 71.2 1.0
CG C:ASP304 2.8 71.2 1.0
C C:ASN296 3.4 63.8 1.0
CG C:ASP301 3.5 76.6 1.0
C C:GLN293 3.6 68.6 1.0
C D:ALA10 3.6 69.4 1.0
CB C:ASP301 4.1 76.6 1.0
CA C:PRO297 4.2 61.7 1.0
N C:PRO297 4.2 61.7 1.0
CB C:ASP304 4.3 71.2 1.0
CA C:GLN293 4.3 68.6 1.0
CA C:ASN296 4.3 63.8 1.0
N C:GLY299 4.4 68.9 1.0
N C:ASN296 4.4 63.8 1.0
OD1 C:ASP301 4.5 76.6 1.0
CA D:ALA10 4.5 69.4 1.0
CB C:ASN296 4.5 63.8 1.0
CA C:GLY299 4.6 68.9 1.0
N D:ASP11 4.6 75.5 1.0
CG C:GLN293 4.6 68.6 1.0
O D:VAL9 4.6 68.4 1.0
C C:PRO297 4.7 61.7 1.0
N C:LEU294 4.7 61.1 1.0
CA D:ASP11 4.7 75.5 1.0
O C:GLU292 4.8 70.3 1.0
N C:PHE298 4.8 62.5 1.0
N C:ASP301 4.9 76.6 1.0
CA C:LEU294 5.0 61.1 1.0

Calcium binding site 4 out of 5 in 6n28

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Calcium binding site 4 out of 5 in the BEST1 Calcium-Bound Open State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of BEST1 Calcium-Bound Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca401

b:30.0
occ:1.00
O D:ASN296 2.2 63.8 1.0
OD2 D:ASP304 2.3 71.2 1.0
O E:ALA10 2.4 69.4 1.0
O D:GLN293 2.5 68.6 1.0
OD2 D:ASP301 2.5 76.6 1.0
OD1 D:ASP304 2.6 71.2 1.0
CG D:ASP304 2.8 71.2 1.0
C D:ASN296 3.4 63.8 1.0
CG D:ASP301 3.5 76.6 1.0
C D:GLN293 3.6 68.6 1.0
C E:ALA10 3.6 69.4 1.0
CB D:ASP301 4.1 76.6 1.0
CA D:PRO297 4.2 61.7 1.0
N D:PRO297 4.2 61.7 1.0
CB D:ASP304 4.3 71.2 1.0
CA D:GLN293 4.3 68.6 1.0
CA D:ASN296 4.3 63.8 1.0
N D:GLY299 4.4 68.9 1.0
N D:ASN296 4.4 63.8 1.0
OD1 D:ASP301 4.5 76.6 1.0
CA E:ALA10 4.5 69.4 1.0
CB D:ASN296 4.5 63.8 1.0
CA D:GLY299 4.6 68.9 1.0
N E:ASP11 4.6 75.5 1.0
O E:VAL9 4.6 68.4 1.0
CG D:GLN293 4.6 68.6 1.0
C D:PRO297 4.7 61.7 1.0
N D:LEU294 4.7 61.1 1.0
CA E:ASP11 4.7 75.5 1.0
O D:GLU292 4.8 70.3 1.0
N D:PHE298 4.8 62.5 1.0
N D:ASP301 4.9 76.6 1.0
CA D:LEU294 5.0 61.1 1.0

Calcium binding site 5 out of 5 in 6n28

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Calcium binding site 5 out of 5 in the BEST1 Calcium-Bound Open State


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of BEST1 Calcium-Bound Open State within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca401

b:30.0
occ:1.00
O E:ASN296 2.2 63.8 1.0
OD2 E:ASP304 2.3 71.2 1.0
O A:ALA10 2.4 69.4 1.0
O E:GLN293 2.5 68.6 1.0
OD2 E:ASP301 2.5 76.6 1.0
OD1 E:ASP304 2.6 71.2 1.0
CG E:ASP304 2.8 71.2 1.0
C E:ASN296 3.4 63.8 1.0
CG E:ASP301 3.5 76.6 1.0
C A:ALA10 3.6 69.4 1.0
C E:GLN293 3.6 68.6 1.0
CB E:ASP301 4.1 76.6 1.0
CA E:PRO297 4.2 61.7 1.0
N E:PRO297 4.2 61.7 1.0
CB E:ASP304 4.3 71.2 1.0
CA E:GLN293 4.3 68.6 1.0
CA E:ASN296 4.3 63.8 1.0
N E:GLY299 4.4 68.9 1.0
N E:ASN296 4.4 63.8 1.0
CA A:ALA10 4.4 69.4 1.0
OD1 E:ASP301 4.5 76.6 1.0
CB E:ASN296 4.5 63.8 1.0
N A:ASP11 4.5 75.5 1.0
CA E:GLY299 4.6 68.9 1.0
O A:VAL9 4.6 68.4 1.0
CG E:GLN293 4.6 68.6 1.0
CA A:ASP11 4.7 75.5 1.0
C E:PRO297 4.7 61.7 1.0
N E:LEU294 4.7 61.1 1.0
O E:GLU292 4.8 70.3 1.0
N E:PHE298 4.8 62.5 1.0
N E:ASP301 4.9 76.6 1.0
CA E:LEU294 5.0 61.1 1.0

Reference:

A.N.Miller, G.Vaisey, S.B.Long. Molecular Mechanisms of Gating in the Calcium-Activated Chloride Channel Bestrophin. Elife V. 8 2019.
ISSN: ESSN 2050-084X
PubMed: 30628889
DOI: 10.7554/ELIFE.43231
Page generated: Sat Dec 12 07:22:17 2020

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