Calcium in PDB 6nn2: Xanthomonas Citri Pgm Apo-Phospho

Protein crystallography data

The structure of Xanthomonas Citri Pgm Apo-Phospho, PDB code: 6nn2 was solved by K.M.Stiers, L.J.Beamer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.35 / 1.44
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.789, 54.734, 174.255, 90.00, 90.00, 90.00
R / Rfree (%) 17.1 / 20.8

Calcium Binding Sites:

The binding sites of Calcium atom in the Xanthomonas Citri Pgm Apo-Phospho (pdb code 6nn2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Xanthomonas Citri Pgm Apo-Phospho, PDB code: 6nn2:

Calcium binding site 1 out of 1 in 6nn2

Go back to Calcium Binding Sites List in 6nn2
Calcium binding site 1 out of 1 in the Xanthomonas Citri Pgm Apo-Phospho


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Xanthomonas Citri Pgm Apo-Phospho within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:14.3
occ:1.00
OD2 A:ASP237 2.0 11.6 1.0
OD1 A:ASP239 2.1 14.1 1.0
OD1 A:ASP241 2.1 11.2 1.0
O2P A:SEP97 2.1 19.6 0.9
O A:HOH602 2.2 28.0 1.0
O A:HOH699 2.3 20.0 1.0
CG A:ASP239 2.9 15.4 1.0
CG A:ASP237 3.0 13.0 1.0
OD2 A:ASP239 3.0 23.1 1.0
CG A:ASP241 3.1 17.5 1.0
P A:SEP97 3.3 70.7 0.9
OD2 A:ASP241 3.4 15.3 1.0
OD1 A:ASP237 3.5 10.9 1.0
O3P A:SEP97 3.6 38.6 0.9
O A:HOH902 3.7 27.2 0.9
O1P A:SEP97 3.7 49.8 0.9
O A:HOH820 3.9 23.1 1.0
O A:HOH1069 4.1 19.1 1.0
O A:HOH750 4.1 38.2 0.9
NE A:ARG242 4.2 15.9 1.0
CB A:ASP237 4.2 13.3 1.0
N A:ASP241 4.3 11.5 1.0
CB A:ASP239 4.3 11.5 1.0
CB A:ASP241 4.4 13.0 1.0
CG A:ARG242 4.5 12.5 1.0
N A:ARG242 4.6 10.7 1.0
OG A:SEP97 4.7 41.1 0.9
N A:ASP239 4.7 11.2 1.0
CA A:ASP241 4.7 10.7 1.0
C A:ASP239 4.8 10.2 1.0
CA A:ASP239 4.8 11.4 1.0
CD A:ARG242 4.8 13.1 1.0
N A:PHE240 4.8 9.8 1.0
C A:ASP241 4.9 11.4 1.0

Reference:

K.M.Stiers, A.C.Graham, J.S.Zhu, D.L.Jakeman, J.C.Nix, L.J.Beamer. Structural and Dynamical Description of the Enzymatic Reaction of A Phosphohexomutase. Struct Dyn. V. 6 24703 2019.
ISSN: ESSN 2329-7778
PubMed: 31041362
DOI: 10.1063/1.5092803
Page generated: Sat Dec 12 07:22:56 2020

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