Calcium in PDB 6qi4: Ncs-1 Bound to A Ligand
Protein crystallography data
The structure of Ncs-1 Bound to A Ligand, PDB code: 6qi4
was solved by
M.J.Sanchez-Barrena,
P.Blanco-Gabella,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
42.35 /
1.78
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.729,
55.603,
77.725,
90.00,
94.97,
90.00
|
R / Rfree (%)
|
21.4 /
23.2
|
Other elements in 6qi4:
The structure of Ncs-1 Bound to A Ligand also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Ncs-1 Bound to A Ligand
(pdb code 6qi4). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the
Ncs-1 Bound to A Ligand, PDB code: 6qi4:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
Calcium binding site 1 out
of 6 in 6qi4
Go back to
Calcium Binding Sites List in 6qi4
Calcium binding site 1 out
of 6 in the Ncs-1 Bound to A Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Ncs-1 Bound to A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:36.3
occ:1.00
|
OD1
|
B:ASN75
|
2.0
|
33.2
|
1.0
|
O
|
B:ARG79
|
2.0
|
39.4
|
1.0
|
OD1
|
B:ASP77
|
2.4
|
43.0
|
1.0
|
OE1
|
B:GLU84
|
2.4
|
31.2
|
1.0
|
OD1
|
B:ASP73
|
2.5
|
40.7
|
1.0
|
O
|
B:HOH334
|
2.5
|
37.2
|
1.0
|
OE2
|
B:GLU84
|
2.6
|
38.6
|
1.0
|
CD
|
B:GLU84
|
2.9
|
35.8
|
1.0
|
CG
|
B:ASN75
|
3.1
|
51.8
|
1.0
|
CG
|
B:ASP77
|
3.2
|
59.4
|
1.0
|
C
|
B:ARG79
|
3.3
|
40.2
|
1.0
|
HD21
|
B:ASN75
|
3.3
|
75.7
|
1.0
|
H
|
B:ARG79
|
3.4
|
49.0
|
1.0
|
CG
|
B:ASP73
|
3.5
|
41.8
|
1.0
|
H
|
B:ASP77
|
3.5
|
60.2
|
1.0
|
HA
|
B:ILE80
|
3.5
|
38.0
|
1.0
|
OD2
|
B:ASP77
|
3.6
|
58.1
|
1.0
|
HA
|
B:ASP73
|
3.6
|
43.1
|
1.0
|
ND2
|
B:ASN75
|
3.6
|
63.1
|
1.0
|
H
|
B:ASN75
|
3.7
|
53.8
|
1.0
|
H
|
B:GLU81
|
3.8
|
36.9
|
1.0
|
HG2
|
B:GLU81
|
4.0
|
40.8
|
1.0
|
N
|
B:ARG79
|
4.0
|
40.8
|
1.0
|
OD2
|
B:ASP73
|
4.2
|
37.5
|
1.0
|
CA
|
B:ARG79
|
4.2
|
38.0
|
1.0
|
N
|
B:ILE80
|
4.2
|
31.1
|
1.0
|
HB2
|
B:ARG79
|
4.2
|
54.3
|
1.0
|
CA
|
B:ASP73
|
4.3
|
35.9
|
1.0
|
CA
|
B:ILE80
|
4.3
|
31.7
|
1.0
|
N
|
B:ASP77
|
4.3
|
50.2
|
1.0
|
CB
|
B:ASP73
|
4.3
|
30.9
|
1.0
|
H
|
B:LYS76
|
4.3
|
74.2
|
1.0
|
CG
|
B:GLU84
|
4.4
|
32.6
|
1.0
|
CB
|
B:ASP77
|
4.4
|
53.2
|
1.0
|
HD22
|
B:ASN75
|
4.5
|
75.7
|
1.0
|
N
|
B:GLU81
|
4.5
|
30.8
|
1.0
|
N
|
B:ASN75
|
4.5
|
44.8
|
1.0
|
H
|
B:GLY78
|
4.5
|
66.3
|
1.0
|
CB
|
B:ASN75
|
4.5
|
44.4
|
1.0
|
H
|
B:GLU74
|
4.5
|
43.6
|
1.0
|
HB2
|
B:ASP73
|
4.5
|
37.1
|
1.0
|
HB3
|
B:ASP77
|
4.5
|
63.9
|
1.0
|
C
|
B:ASP73
|
4.6
|
39.9
|
1.0
|
N
|
B:LYS76
|
4.6
|
61.8
|
1.0
|
CB
|
B:ARG79
|
4.7
|
45.2
|
1.0
|
HG3
|
B:GLU84
|
4.7
|
39.2
|
1.0
|
N
|
B:GLU74
|
4.7
|
36.4
|
1.0
|
N
|
B:GLY78
|
4.8
|
55.2
|
1.0
|
CA
|
B:ASN75
|
4.8
|
54.1
|
1.0
|
CA
|
B:ASP77
|
4.8
|
51.0
|
1.0
|
HB3
|
B:GLU81
|
4.9
|
48.4
|
1.0
|
HB3
|
B:ASN75
|
4.9
|
53.2
|
1.0
|
HG2
|
B:GLU84
|
4.9
|
39.2
|
1.0
|
C
|
B:ASN75
|
4.9
|
60.3
|
1.0
|
C
|
B:ILE80
|
4.9
|
35.5
|
1.0
|
CG
|
B:GLU81
|
4.9
|
34.0
|
1.0
|
OE1
|
B:GLU81
|
4.9
|
53.0
|
1.0
|
HB2
|
B:GLU84
|
5.0
|
31.6
|
1.0
|
HB3
|
B:ARG79
|
5.0
|
54.3
|
1.0
|
|
Calcium binding site 2 out
of 6 in 6qi4
Go back to
Calcium Binding Sites List in 6qi4
Calcium binding site 2 out
of 6 in the Ncs-1 Bound to A Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Ncs-1 Bound to A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:22.9
occ:1.00
|
O
|
B:HOH380
|
2.3
|
26.6
|
1.0
|
OD1
|
B:ASP113
|
2.3
|
37.2
|
1.0
|
OD1
|
B:ASP109
|
2.3
|
35.4
|
1.0
|
OD1
|
B:ASP111
|
2.3
|
35.3
|
1.0
|
O
|
B:TYR115
|
2.4
|
30.1
|
1.0
|
OE1
|
B:GLU120
|
2.4
|
28.6
|
1.0
|
OE2
|
B:GLU120
|
2.6
|
33.9
|
1.0
|
CD
|
B:GLU120
|
2.8
|
37.4
|
1.0
|
CG
|
B:ASP113
|
3.3
|
44.2
|
1.0
|
CG
|
B:ASP111
|
3.3
|
46.3
|
1.0
|
H
|
B:ASP113
|
3.3
|
44.2
|
1.0
|
H
|
B:ASP111
|
3.4
|
39.3
|
1.0
|
CG
|
B:ASP109
|
3.4
|
35.0
|
1.0
|
H
|
B:TYR115
|
3.4
|
35.7
|
1.0
|
C
|
B:TYR115
|
3.6
|
30.6
|
1.0
|
HA
|
B:ASP109
|
3.6
|
29.2
|
1.0
|
OD2
|
B:ASP111
|
3.8
|
52.5
|
1.0
|
HA
|
B:ILE116
|
3.8
|
27.6
|
1.0
|
HG23
|
B:THR117
|
3.8
|
38.5
|
1.0
|
OD2
|
B:ASP113
|
3.9
|
38.3
|
1.0
|
H
|
B:THR117
|
4.0
|
30.5
|
1.0
|
HB2
|
B:TYR115
|
4.0
|
39.2
|
1.0
|
H
|
B:ASN112
|
4.1
|
59.1
|
1.0
|
N
|
B:ASP113
|
4.1
|
36.9
|
1.0
|
OD2
|
B:ASP109
|
4.2
|
34.6
|
1.0
|
N
|
B:TYR115
|
4.2
|
29.7
|
1.0
|
N
|
B:ASP111
|
4.2
|
32.8
|
1.0
|
CA
|
B:ASP109
|
4.3
|
24.4
|
1.0
|
HB3
|
B:ASP113
|
4.3
|
53.6
|
1.0
|
CB
|
B:ASP113
|
4.3
|
44.7
|
1.0
|
H
|
B:LEU110
|
4.4
|
33.6
|
1.0
|
CA
|
B:TYR115
|
4.4
|
31.2
|
1.0
|
CG
|
B:GLU120
|
4.4
|
30.9
|
1.0
|
CB
|
B:ASP109
|
4.4
|
29.0
|
1.0
|
CB
|
B:ASP111
|
4.4
|
43.1
|
1.0
|
C
|
B:ASP109
|
4.4
|
35.1
|
1.0
|
N
|
B:ILE116
|
4.5
|
26.1
|
1.0
|
N
|
B:ASN112
|
4.5
|
49.3
|
1.0
|
CA
|
B:ILE116
|
4.5
|
23.0
|
1.0
|
N
|
B:LEU110
|
4.5
|
28.0
|
1.0
|
H
|
B:GLY114
|
4.6
|
36.9
|
1.0
|
HB3
|
B:ASP111
|
4.7
|
51.8
|
1.0
|
CA
|
B:ASP113
|
4.7
|
40.0
|
1.0
|
CB
|
B:TYR115
|
4.7
|
32.7
|
1.0
|
CA
|
B:ASP111
|
4.7
|
40.3
|
1.0
|
N
|
B:THR117
|
4.7
|
25.4
|
1.0
|
HB2
|
B:ASP109
|
4.7
|
34.8
|
1.0
|
HG3
|
B:GLU120
|
4.7
|
37.1
|
1.0
|
O
|
B:HOH394
|
4.7
|
55.6
|
1.0
|
CG2
|
B:THR117
|
4.7
|
32.1
|
1.0
|
C
|
B:ASP111
|
4.8
|
42.3
|
1.0
|
HG2
|
B:GLU120
|
4.8
|
37.1
|
1.0
|
N
|
B:GLY114
|
4.8
|
30.8
|
1.0
|
O
|
B:ASP109
|
4.9
|
30.7
|
1.0
|
O
|
B:HOH342
|
4.9
|
32.6
|
1.0
|
C
|
B:ASP113
|
5.0
|
37.6
|
1.0
|
HG22
|
B:THR117
|
5.0
|
38.5
|
1.0
|
|
Calcium binding site 3 out
of 6 in 6qi4
Go back to
Calcium Binding Sites List in 6qi4
Calcium binding site 3 out
of 6 in the Ncs-1 Bound to A Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Ncs-1 Bound to A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca203
b:31.9
occ:1.00
|
O
|
B:LYS163
|
2.2
|
30.4
|
1.0
|
OD1
|
B:ASN159
|
2.3
|
43.1
|
1.0
|
OD1
|
B:ASP157
|
2.4
|
29.2
|
1.0
|
OD1
|
B:ASP161
|
2.4
|
39.3
|
1.0
|
O
|
B:HOH315
|
2.5
|
39.4
|
1.0
|
OE1
|
B:GLU168
|
2.5
|
31.2
|
1.0
|
OE2
|
B:GLU168
|
2.7
|
35.6
|
1.0
|
CD
|
B:GLU168
|
3.0
|
38.4
|
1.0
|
CG
|
B:ASP161
|
3.3
|
44.2
|
1.0
|
CG
|
B:ASN159
|
3.4
|
43.6
|
1.0
|
C
|
B:LYS163
|
3.4
|
31.6
|
1.0
|
H
|
B:ASP161
|
3.5
|
46.8
|
1.0
|
HA
|
B:LEU164
|
3.5
|
35.9
|
1.0
|
CG
|
B:ASP157
|
3.5
|
35.0
|
1.0
|
H
|
B:LYS163
|
3.6
|
33.6
|
1.0
|
H
|
B:ASN159
|
3.6
|
54.6
|
1.0
|
OD2
|
B:ASP161
|
3.6
|
42.0
|
1.0
|
HA
|
B:ASP157
|
3.7
|
34.7
|
1.0
|
HD21
|
B:ASN159
|
3.7
|
51.7
|
1.0
|
H
|
B:THR165
|
3.9
|
28.6
|
1.0
|
ND2
|
B:ASN159
|
4.0
|
43.1
|
1.0
|
HD23
|
B:LEU164
|
4.0
|
31.9
|
1.0
|
HG23
|
B:THR165
|
4.1
|
38.2
|
1.0
|
HB2
|
B:LYS163
|
4.2
|
32.0
|
1.0
|
CA
|
B:LEU164
|
4.3
|
29.9
|
1.0
|
N
|
B:LYS163
|
4.3
|
28.0
|
1.0
|
N
|
B:ASP161
|
4.3
|
39.0
|
1.0
|
N
|
B:LEU164
|
4.3
|
28.0
|
1.0
|
OD2
|
B:ASP157
|
4.4
|
30.7
|
1.0
|
H
|
B:LYS158
|
4.4
|
41.1
|
1.0
|
H
|
B:ALA160
|
4.4
|
55.0
|
1.0
|
CA
|
B:ASP157
|
4.4
|
28.9
|
1.0
|
CA
|
B:LYS163
|
4.4
|
28.1
|
1.0
|
N
|
B:ASN159
|
4.4
|
45.5
|
1.0
|
CB
|
B:ASP157
|
4.5
|
35.8
|
1.0
|
CG
|
B:GLU168
|
4.5
|
32.5
|
1.0
|
CB
|
B:ASN159
|
4.6
|
57.3
|
1.0
|
CB
|
B:ASP161
|
4.6
|
40.1
|
1.0
|
N
|
B:THR165
|
4.6
|
23.9
|
1.0
|
HB2
|
B:ASP157
|
4.7
|
42.9
|
1.0
|
N
|
B:ALA160
|
4.7
|
45.9
|
1.0
|
N
|
B:LYS158
|
4.7
|
34.3
|
1.0
|
H
|
B:GLY162
|
4.7
|
41.0
|
1.0
|
C
|
B:ASP157
|
4.8
|
34.0
|
1.0
|
HD22
|
B:ASN159
|
4.8
|
51.7
|
1.0
|
CB
|
B:LYS163
|
4.8
|
26.7
|
1.0
|
HB3
|
B:ASN159
|
4.8
|
68.8
|
1.0
|
HG3
|
B:GLU168
|
4.8
|
39.0
|
1.0
|
CD2
|
B:LEU164
|
4.9
|
26.6
|
1.0
|
CA
|
B:ASN159
|
4.9
|
49.0
|
1.0
|
CA
|
B:ASP161
|
4.9
|
35.1
|
1.0
|
HB3
|
B:ASP161
|
4.9
|
48.2
|
1.0
|
HG2
|
B:GLU168
|
4.9
|
39.0
|
1.0
|
HB2
|
B:GLU168
|
4.9
|
34.2
|
1.0
|
C
|
B:LEU164
|
5.0
|
30.1
|
1.0
|
C
|
B:ASN159
|
5.0
|
42.3
|
1.0
|
N
|
B:GLY162
|
5.0
|
34.1
|
1.0
|
|
Calcium binding site 4 out
of 6 in 6qi4
Go back to
Calcium Binding Sites List in 6qi4
Calcium binding site 4 out
of 6 in the Ncs-1 Bound to A Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Ncs-1 Bound to A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca202
b:46.0
occ:1.00
|
OD1
|
C:ASN75
|
2.1
|
61.1
|
1.0
|
O
|
C:ARG79
|
2.2
|
53.0
|
1.0
|
OD1
|
C:ASP77
|
2.3
|
71.7
|
1.0
|
OD1
|
C:ASP73
|
2.4
|
55.5
|
1.0
|
OE2
|
C:GLU84
|
2.4
|
54.0
|
1.0
|
O
|
C:HOH306
|
2.5
|
45.8
|
1.0
|
OE1
|
C:GLU84
|
2.7
|
54.9
|
1.0
|
CD
|
C:GLU84
|
2.9
|
56.9
|
1.0
|
CG
|
C:ASN75
|
3.0
|
65.3
|
1.0
|
HD21
|
C:ASN75
|
3.0
|
65.6
|
1.0
|
CG
|
C:ASP77
|
3.1
|
72.1
|
1.0
|
H
|
C:ASP77
|
3.4
|
81.5
|
1.0
|
ND2
|
C:ASN75
|
3.4
|
54.6
|
1.0
|
OD2
|
C:ASP77
|
3.4
|
71.1
|
1.0
|
H
|
C:ARG79
|
3.4
|
70.0
|
1.0
|
C
|
C:ARG79
|
3.4
|
56.1
|
1.0
|
CG
|
C:ASP73
|
3.5
|
58.1
|
1.0
|
H
|
C:ASN75
|
3.6
|
77.6
|
1.0
|
HA
|
C:ASP73
|
3.6
|
59.1
|
1.0
|
HA
|
C:ILE80
|
3.9
|
69.3
|
1.0
|
H
|
C:GLU81
|
3.9
|
65.8
|
1.0
|
N
|
C:ARG79
|
4.1
|
58.4
|
1.0
|
OD2
|
C:ASP73
|
4.2
|
54.3
|
1.0
|
N
|
C:ASP77
|
4.2
|
67.9
|
1.0
|
CB
|
C:ASP77
|
4.2
|
73.3
|
1.0
|
HD22
|
C:ASN75
|
4.2
|
65.6
|
1.0
|
HB2
|
C:ARG79
|
4.3
|
86.2
|
1.0
|
CA
|
C:ARG79
|
4.3
|
63.9
|
1.0
|
H
|
C:LYS76
|
4.3
|
72.2
|
1.0
|
HB3
|
C:ASP77
|
4.3
|
88.0
|
1.0
|
CA
|
C:ASP73
|
4.3
|
49.2
|
1.0
|
H
|
C:GLU74
|
4.3
|
64.3
|
1.0
|
N
|
C:ASN75
|
4.4
|
64.6
|
1.0
|
N
|
C:ILE80
|
4.4
|
51.5
|
1.0
|
CB
|
C:ASN75
|
4.4
|
62.2
|
1.0
|
CB
|
C:ASP73
|
4.4
|
48.4
|
1.0
|
CG
|
C:GLU84
|
4.4
|
52.1
|
1.0
|
HG2
|
C:GLU81
|
4.4
|
80.1
|
1.0
|
H
|
C:GLY78
|
4.5
|
79.1
|
1.0
|
CA
|
C:ILE80
|
4.6
|
57.7
|
1.0
|
C
|
C:ASP73
|
4.6
|
58.8
|
1.0
|
N
|
C:GLU81
|
4.6
|
54.8
|
1.0
|
N
|
C:GLU74
|
4.6
|
53.6
|
1.0
|
N
|
C:LYS76
|
4.6
|
60.2
|
1.0
|
CA
|
C:ASP77
|
4.7
|
72.5
|
1.0
|
HB2
|
C:ASP73
|
4.7
|
58.0
|
1.0
|
CA
|
C:ASN75
|
4.8
|
68.9
|
1.0
|
HG3
|
C:GLU84
|
4.8
|
62.5
|
1.0
|
HB3
|
C:ASN75
|
4.8
|
74.7
|
1.0
|
C
|
C:ASN75
|
4.8
|
74.5
|
1.0
|
N
|
C:GLY78
|
4.8
|
65.9
|
1.0
|
HG2
|
C:GLU84
|
4.8
|
62.5
|
1.0
|
CB
|
C:ARG79
|
4.9
|
71.8
|
1.0
|
C
|
C:ASP77
|
4.9
|
69.3
|
1.0
|
|
Calcium binding site 5 out
of 6 in 6qi4
Go back to
Calcium Binding Sites List in 6qi4
Calcium binding site 5 out
of 6 in the Ncs-1 Bound to A Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Ncs-1 Bound to A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca203
b:46.0
occ:1.00
|
OD1
|
C:ASP113
|
2.0
|
48.4
|
1.0
|
O
|
C:TYR115
|
2.3
|
48.0
|
1.0
|
OE2
|
C:GLU120
|
2.4
|
49.0
|
1.0
|
OD1
|
C:ASP109
|
2.4
|
45.1
|
1.0
|
OD1
|
C:ASP111
|
2.4
|
54.7
|
1.0
|
O
|
C:HOH320
|
2.4
|
40.9
|
1.0
|
OE1
|
C:GLU120
|
2.5
|
48.5
|
1.0
|
CD
|
C:GLU120
|
2.7
|
51.2
|
1.0
|
CG
|
C:ASP113
|
3.1
|
64.1
|
1.0
|
CG
|
C:ASP111
|
3.2
|
53.3
|
1.0
|
H
|
C:ASP111
|
3.4
|
69.8
|
1.0
|
H
|
C:ASP113
|
3.4
|
65.6
|
1.0
|
HA
|
C:ASP109
|
3.5
|
55.1
|
1.0
|
CG
|
C:ASP109
|
3.5
|
47.3
|
1.0
|
H
|
C:TYR115
|
3.5
|
60.9
|
1.0
|
C
|
C:TYR115
|
3.5
|
42.9
|
1.0
|
OD2
|
C:ASP111
|
3.6
|
55.9
|
1.0
|
HG23
|
C:THR117
|
3.7
|
57.6
|
1.0
|
OD2
|
C:ASP113
|
3.7
|
56.9
|
1.0
|
HA
|
C:ILE116
|
3.8
|
48.1
|
1.0
|
H
|
C:THR117
|
4.0
|
53.1
|
1.0
|
H
|
C:LEU110
|
4.1
|
59.0
|
1.0
|
HB3
|
C:ASP113
|
4.1
|
72.7
|
1.0
|
CB
|
C:ASP113
|
4.2
|
60.6
|
1.0
|
CA
|
C:ASP109
|
4.2
|
45.9
|
1.0
|
HB2
|
C:TYR115
|
4.2
|
55.1
|
1.0
|
CG
|
C:GLU120
|
4.2
|
49.3
|
1.0
|
N
|
C:ASP111
|
4.2
|
58.1
|
1.0
|
N
|
C:ASP113
|
4.2
|
54.7
|
1.0
|
N
|
C:TYR115
|
4.3
|
50.7
|
1.0
|
OD2
|
C:ASP109
|
4.3
|
40.7
|
1.0
|
C
|
C:ASP109
|
4.3
|
54.7
|
1.0
|
N
|
C:LEU110
|
4.4
|
49.1
|
1.0
|
CB
|
C:ASP109
|
4.4
|
42.6
|
1.0
|
CA
|
C:TYR115
|
4.4
|
44.0
|
1.0
|
H
|
C:ASN112
|
4.5
|
69.2
|
1.0
|
CB
|
C:ASP111
|
4.5
|
56.1
|
1.0
|
N
|
C:ILE116
|
4.5
|
38.0
|
1.0
|
HG3
|
C:GLU120
|
4.5
|
59.2
|
1.0
|
CA
|
C:ILE116
|
4.5
|
40.1
|
1.0
|
HG2
|
C:GLU120
|
4.6
|
59.2
|
1.0
|
CG2
|
C:THR117
|
4.6
|
48.0
|
1.0
|
N
|
C:THR117
|
4.6
|
44.2
|
1.0
|
N
|
C:ASN112
|
4.7
|
57.6
|
1.0
|
HB2
|
C:ASP109
|
4.7
|
51.1
|
1.0
|
CA
|
C:ASP113
|
4.7
|
54.6
|
1.0
|
CA
|
C:ASP111
|
4.7
|
56.5
|
1.0
|
H
|
C:GLY114
|
4.7
|
60.0
|
1.0
|
C
|
C:ASP111
|
4.8
|
54.5
|
1.0
|
HB3
|
C:ASP111
|
4.8
|
67.3
|
1.0
|
CB
|
C:TYR115
|
4.8
|
45.9
|
1.0
|
O
|
C:ASP109
|
4.9
|
43.6
|
1.0
|
HG22
|
C:THR117
|
4.9
|
57.6
|
1.0
|
HG21
|
C:THR117
|
5.0
|
57.6
|
1.0
|
HB2
|
C:GLU120
|
5.0
|
54.0
|
1.0
|
HB2
|
C:ASP113
|
5.0
|
72.7
|
1.0
|
HG1
|
C:THR117
|
5.0
|
58.2
|
1.0
|
N
|
C:GLY114
|
5.0
|
50.0
|
1.0
|
|
Calcium binding site 6 out
of 6 in 6qi4
Go back to
Calcium Binding Sites List in 6qi4
Calcium binding site 6 out
of 6 in the Ncs-1 Bound to A Ligand
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Ncs-1 Bound to A Ligand within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca204
b:48.3
occ:1.00
|
OD1
|
C:ASN159
|
2.2
|
67.0
|
1.0
|
OD1
|
C:ASP161
|
2.2
|
60.5
|
1.0
|
O
|
C:LYS163
|
2.3
|
44.6
|
1.0
|
O
|
C:HOH323
|
2.3
|
46.0
|
1.0
|
OD1
|
C:ASP157
|
2.5
|
46.5
|
1.0
|
OE2
|
C:GLU168
|
2.5
|
50.4
|
1.0
|
OE1
|
C:GLU168
|
2.5
|
53.2
|
1.0
|
CD
|
C:GLU168
|
2.8
|
48.1
|
1.0
|
HD21
|
C:ASN159
|
3.2
|
86.0
|
1.0
|
CG
|
C:ASN159
|
3.2
|
68.2
|
1.0
|
CG
|
C:ASP161
|
3.2
|
66.5
|
1.0
|
C
|
C:LYS163
|
3.5
|
49.4
|
1.0
|
ND2
|
C:ASN159
|
3.5
|
71.6
|
1.0
|
H
|
C:ASN159
|
3.6
|
69.9
|
1.0
|
OD2
|
C:ASP161
|
3.6
|
62.0
|
1.0
|
CG
|
C:ASP157
|
3.6
|
48.9
|
1.0
|
H
|
C:LYS163
|
3.6
|
55.7
|
1.0
|
H
|
C:ASP161
|
3.6
|
71.6
|
1.0
|
HA
|
C:LEU164
|
3.7
|
51.4
|
1.0
|
HA
|
C:ASP157
|
3.8
|
60.1
|
1.0
|
HB2
|
C:LYS163
|
4.0
|
66.2
|
1.0
|
H
|
C:THR165
|
4.0
|
49.1
|
1.0
|
HD23
|
C:LEU164
|
4.1
|
65.0
|
1.0
|
H
|
C:LYS158
|
4.1
|
69.2
|
1.0
|
OD2
|
C:ASP157
|
4.3
|
58.5
|
1.0
|
HG21
|
C:THR165
|
4.3
|
76.0
|
1.0
|
N
|
C:LYS163
|
4.3
|
46.4
|
1.0
|
CG
|
C:GLU168
|
4.3
|
48.8
|
1.0
|
CA
|
C:LYS163
|
4.4
|
51.4
|
1.0
|
O
|
C:HOH331
|
4.4
|
55.9
|
1.0
|
N
|
C:LEU164
|
4.4
|
39.8
|
1.0
|
HD22
|
C:ASN159
|
4.4
|
86.0
|
1.0
|
N
|
C:ASN159
|
4.4
|
58.2
|
1.0
|
N
|
C:ASP161
|
4.4
|
59.7
|
1.0
|
CA
|
C:LEU164
|
4.4
|
42.8
|
1.0
|
H
|
C:ALA160
|
4.5
|
68.5
|
1.0
|
CB
|
C:ASP161
|
4.5
|
58.8
|
1.0
|
CA
|
C:ASP157
|
4.5
|
50.1
|
1.0
|
CB
|
C:ASN159
|
4.5
|
68.5
|
1.0
|
N
|
C:LYS158
|
4.6
|
57.7
|
1.0
|
CB
|
C:ASP157
|
4.6
|
51.5
|
1.0
|
CB
|
C:LYS163
|
4.6
|
55.1
|
1.0
|
HB3
|
C:ASP161
|
4.7
|
70.5
|
1.0
|
HG3
|
C:GLU168
|
4.7
|
58.6
|
1.0
|
HG2
|
C:GLU168
|
4.7
|
58.6
|
1.0
|
N
|
C:ALA160
|
4.7
|
57.1
|
1.0
|
N
|
C:THR165
|
4.7
|
40.9
|
1.0
|
C
|
C:ASP157
|
4.8
|
57.0
|
1.0
|
CA
|
C:ASN159
|
4.8
|
52.6
|
1.0
|
HG23
|
C:THR165
|
4.8
|
76.0
|
1.0
|
H
|
C:GLY162
|
4.9
|
61.5
|
1.0
|
C
|
C:ASN159
|
4.9
|
61.5
|
1.0
|
HB2
|
C:ASP157
|
4.9
|
61.9
|
1.0
|
HB3
|
C:LYS163
|
4.9
|
66.2
|
1.0
|
HB3
|
C:ASN159
|
4.9
|
82.2
|
1.0
|
HD22
|
C:LEU164
|
4.9
|
65.0
|
1.0
|
CA
|
C:ASP161
|
5.0
|
51.8
|
1.0
|
HB2
|
C:GLU168
|
5.0
|
51.8
|
1.0
|
CD2
|
C:LEU164
|
5.0
|
54.1
|
1.0
|
|
Reference:
A.Canal-Martin,
J.Sastre,
M.J.Sanchez-Barrena,
A.Canales,
S.Baldominos,
N.Pascual,
L.Martinez-Gonzalez,
D.Molero,
M.E.Fernandez-Valle,
E.Saez,
P.Blanco-Gabella,
E.Gomez-Rubio,
S.Martin-Santamaria,
A.Saiz,
A.Mansilla,
F.J.Canada,
J.Jimenez-Barbero,
A.Martinez,
R.Perez-Fernandez.
Insights Into Real-Time Chemical Processes in A Calcium Sensor Protein-Directed Dynamic Library. Nat Commun V. 10 2798 2019.
ISSN: ESSN 2041-1723
PubMed: 31243268
DOI: 10.1038/S41467-019-10627-W
Page generated: Tue Jul 16 13:51:33 2024
|