Calcium in PDB 6qlb: Calpain Small Subunit 1, Rna-Binding Protein Hfq
Protein crystallography data
The structure of Calpain Small Subunit 1, Rna-Binding Protein Hfq, PDB code: 6qlb
was solved by
P.J.Rizkallah,
J.O.Cresser-Brown,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
66.01 /
2.32
|
Space group
|
P 21 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
147.607,
147.607,
147.607,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.1 /
24.7
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Calcium atom in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
(pdb code 6qlb). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 20 binding sites of Calcium where determined in the
Calpain Small Subunit 1, Rna-Binding Protein Hfq, PDB code: 6qlb:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 1 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca201
b:49.7
occ:1.00
|
OD1
|
A:ASP59
|
2.2
|
53.6
|
1.0
|
O
|
A:LYS63
|
2.3
|
52.0
|
1.0
|
OD1
|
A:ASP57
|
2.3
|
50.4
|
1.0
|
OE2
|
A:GLU68
|
2.4
|
65.7
|
1.0
|
O
|
A:HOH301
|
2.5
|
46.6
|
1.0
|
OG1
|
A:THR61
|
2.5
|
52.7
|
1.0
|
OE1
|
A:GLU68
|
3.0
|
69.8
|
1.0
|
CD
|
A:GLU68
|
3.1
|
64.4
|
1.0
|
CG
|
A:ASP59
|
3.2
|
58.5
|
1.0
|
CG
|
A:ASP57
|
3.5
|
47.6
|
1.0
|
C
|
A:LYS63
|
3.5
|
51.1
|
1.0
|
OD2
|
A:ASP59
|
3.6
|
60.0
|
1.0
|
CB
|
A:THR61
|
3.7
|
54.2
|
1.0
|
CG2
|
A:THR61
|
4.0
|
54.7
|
1.0
|
N
|
A:THR61
|
4.0
|
50.8
|
1.0
|
OE1
|
A:GLU19
|
4.1
|
67.9
|
1.0
|
N
|
A:GLY65
|
4.1
|
56.0
|
1.0
|
CA
|
A:ASP57
|
4.2
|
49.6
|
1.0
|
OE2
|
A:GLU19
|
4.3
|
68.6
|
1.0
|
CA
|
A:LEU64
|
4.3
|
50.2
|
1.0
|
N
|
A:LYS63
|
4.3
|
51.1
|
1.0
|
CB
|
A:ASP57
|
4.3
|
46.7
|
1.0
|
N
|
A:LEU64
|
4.3
|
49.8
|
1.0
|
OD2
|
A:ASP57
|
4.4
|
44.2
|
1.0
|
CA
|
A:THR61
|
4.4
|
51.7
|
1.0
|
CD
|
A:GLU19
|
4.5
|
66.7
|
1.0
|
CA
|
A:LYS63
|
4.5
|
50.5
|
1.0
|
CB
|
A:ASP59
|
4.6
|
59.4
|
1.0
|
CG
|
A:GLU68
|
4.6
|
61.4
|
1.0
|
C
|
A:LEU64
|
4.6
|
54.8
|
1.0
|
N
|
A:ASP59
|
4.6
|
56.0
|
1.0
|
N
|
A:THR60
|
4.6
|
52.7
|
1.0
|
C
|
A:ASP57
|
4.6
|
52.0
|
1.0
|
N
|
A:GLY62
|
4.7
|
48.8
|
1.0
|
C
|
A:ASP59
|
4.8
|
54.6
|
1.0
|
C
|
A:THR61
|
4.9
|
50.9
|
1.0
|
CA
|
A:ASP59
|
4.9
|
56.2
|
1.0
|
|
Calcium binding site 2 out
of 20 in 6qlb
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Calcium Binding Sites List in 6qlb
Calcium binding site 2 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca202
b:57.4
occ:1.00
|
O
|
A:HOH303
|
2.1
|
53.1
|
1.0
|
OD1
|
A:ASP87
|
2.2
|
63.0
|
1.0
|
O
|
A:THR93
|
2.4
|
53.2
|
1.0
|
OG
|
A:SER91
|
2.4
|
63.2
|
1.0
|
OD1
|
A:ASP89
|
2.4
|
69.3
|
1.0
|
OE1
|
A:GLU98
|
2.5
|
54.4
|
1.0
|
OE2
|
A:GLU98
|
2.6
|
57.7
|
1.0
|
CD
|
A:GLU98
|
2.9
|
56.0
|
1.0
|
CG
|
A:ASP87
|
3.4
|
62.2
|
1.0
|
CG
|
A:ASP89
|
3.4
|
69.5
|
1.0
|
C
|
A:THR93
|
3.6
|
49.6
|
1.0
|
CB
|
A:SER91
|
3.6
|
65.8
|
1.0
|
OD2
|
A:ASP89
|
3.8
|
66.4
|
1.0
|
CA
|
A:ASP87
|
4.0
|
61.1
|
1.0
|
N
|
A:SER91
|
4.0
|
70.3
|
1.0
|
CB
|
A:ASP87
|
4.1
|
61.0
|
1.0
|
OG1
|
A:THR93
|
4.2
|
54.7
|
1.0
|
N
|
A:GLY95
|
4.2
|
51.5
|
1.0
|
OD2
|
A:ASP87
|
4.2
|
61.9
|
1.0
|
C
|
A:ASP87
|
4.3
|
65.5
|
1.0
|
N
|
A:ASP89
|
4.3
|
73.8
|
1.0
|
CA
|
A:SER91
|
4.4
|
67.2
|
1.0
|
N
|
A:ILE94
|
4.4
|
48.1
|
1.0
|
N
|
A:THR93
|
4.4
|
52.4
|
1.0
|
CA
|
A:ILE94
|
4.4
|
49.4
|
1.0
|
CG
|
A:GLU98
|
4.4
|
55.7
|
1.0
|
ND2
|
A:ASN128
|
4.5
|
59.0
|
1.0
|
CA
|
A:THR93
|
4.5
|
50.4
|
1.0
|
N
|
A:THR88
|
4.6
|
68.0
|
1.0
|
N
|
A:ARG90
|
4.6
|
77.4
|
1.0
|
CB
|
A:ASP89
|
4.6
|
73.0
|
1.0
|
C
|
A:ILE94
|
4.8
|
49.3
|
1.0
|
CA
|
A:ASP89
|
4.8
|
74.5
|
1.0
|
O
|
A:ASP87
|
4.8
|
65.8
|
1.0
|
C
|
A:ASP89
|
4.8
|
74.6
|
1.0
|
N
|
A:GLY92
|
4.9
|
61.2
|
1.0
|
C
|
A:SER91
|
5.0
|
64.8
|
1.0
|
|
Calcium binding site 3 out
of 20 in 6qlb
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Calcium Binding Sites List in 6qlb
Calcium binding site 3 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca203
b:44.0
occ:1.00
|
O
|
A:HOH325
|
2.1
|
34.6
|
1.0
|
OD1
|
A:ASN133
|
2.2
|
35.9
|
1.0
|
OD2
|
A:ASP130
|
2.3
|
43.8
|
1.0
|
O
|
A:HOH311
|
2.4
|
46.4
|
1.0
|
OD1
|
A:ASP130
|
2.6
|
44.3
|
1.0
|
OD1
|
A:ASP42
|
2.6
|
49.1
|
1.0
|
OD1
|
A:ASP132
|
2.6
|
45.9
|
1.0
|
OD2
|
A:ASP132
|
2.6
|
41.4
|
1.0
|
CG
|
A:ASP130
|
2.7
|
43.2
|
1.0
|
CG
|
A:ASP132
|
2.9
|
43.0
|
1.0
|
CG
|
A:ASN133
|
3.3
|
35.6
|
1.0
|
CG
|
A:ASP42
|
3.4
|
54.0
|
1.0
|
OD2
|
A:ASP42
|
3.7
|
63.2
|
1.0
|
ND2
|
A:ASN133
|
4.0
|
36.5
|
1.0
|
N
|
A:ASN133
|
4.2
|
36.0
|
1.0
|
CB
|
A:ASN133
|
4.2
|
35.3
|
1.0
|
CB
|
A:ASP130
|
4.2
|
44.0
|
1.0
|
O
|
A:HOH322
|
4.3
|
45.1
|
1.0
|
CB
|
A:ASP132
|
4.4
|
42.0
|
1.0
|
N
|
A:ASP42
|
4.6
|
52.0
|
1.0
|
CA
|
A:ASN133
|
4.7
|
34.9
|
1.0
|
O
|
A:GLY43
|
4.8
|
47.6
|
1.0
|
CB
|
A:ASP42
|
4.8
|
53.5
|
1.0
|
OD1
|
B:ASP47
|
4.8
|
59.4
|
1.0
|
OG1
|
A:THR41
|
4.8
|
53.4
|
1.0
|
OD2
|
B:ASP47
|
4.8
|
64.3
|
1.0
|
C
|
A:ASP132
|
4.9
|
36.4
|
1.0
|
O
|
A:HOH319
|
5.0
|
46.4
|
1.0
|
|
Calcium binding site 4 out
of 20 in 6qlb
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Calcium Binding Sites List in 6qlb
Calcium binding site 4 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca204
b:70.1
occ:1.00
|
OD1
|
A:ASP17
|
2.2
|
75.7
|
1.0
|
O
|
A:HOH309
|
2.3
|
62.1
|
1.0
|
OE1
|
A:GLU24
|
2.3
|
57.7
|
1.0
|
O
|
A:GLU19
|
2.4
|
58.4
|
1.0
|
O
|
A:ALA14
|
2.4
|
71.0
|
1.0
|
O
|
A:HOH318
|
2.4
|
52.5
|
1.0
|
OE2
|
A:GLU24
|
2.5
|
60.8
|
1.0
|
CD
|
A:GLU24
|
2.8
|
57.8
|
1.0
|
CG
|
A:ASP17
|
3.3
|
77.1
|
1.0
|
C
|
A:ALA14
|
3.5
|
75.9
|
1.0
|
C
|
A:GLU19
|
3.6
|
58.2
|
1.0
|
OD2
|
A:ASP17
|
3.7
|
76.4
|
1.0
|
CA
|
A:ALA14
|
4.0
|
74.7
|
1.0
|
N
|
A:SER21
|
4.2
|
50.2
|
1.0
|
CG
|
A:GLU24
|
4.3
|
56.7
|
1.0
|
N
|
A:GLU19
|
4.4
|
67.4
|
1.0
|
N
|
A:VAL20
|
4.4
|
54.9
|
1.0
|
CA
|
A:VAL20
|
4.4
|
53.4
|
1.0
|
N
|
A:GLY15
|
4.6
|
80.7
|
1.0
|
CB
|
A:ASP17
|
4.6
|
78.3
|
1.0
|
CA
|
A:GLU19
|
4.6
|
63.1
|
1.0
|
N
|
A:ASP17
|
4.7
|
84.9
|
1.0
|
CB
|
A:ALA14
|
4.7
|
75.0
|
1.0
|
C
|
A:VAL20
|
4.7
|
49.9
|
1.0
|
CB
|
A:SER21
|
4.8
|
47.9
|
1.0
|
O
|
A:LEU13
|
4.8
|
72.8
|
1.0
|
OG
|
A:SER21
|
4.8
|
51.2
|
1.0
|
N
|
A:MET18
|
4.9
|
80.7
|
1.0
|
CD
|
A:LYS63
|
5.0
|
56.8
|
1.0
|
CA
|
A:ASP17
|
5.0
|
81.3
|
1.0
|
|
Calcium binding site 5 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 5 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca205
b:86.3
occ:1.00
|
O
|
A:GLN158
|
2.3
|
51.2
|
1.0
|
OG1
|
A:THR156
|
2.3
|
43.4
|
1.0
|
OD1
|
A:ASN154
|
2.7
|
50.8
|
1.0
|
O
|
A:HOH324
|
2.7
|
44.4
|
1.0
|
O
|
A:HOH329
|
2.7
|
46.4
|
1.0
|
OD1
|
A:ASP152
|
2.8
|
49.7
|
1.0
|
C
|
A:GLN158
|
3.4
|
47.0
|
1.0
|
CG
|
A:ASN154
|
3.6
|
53.1
|
1.0
|
CB
|
A:THR156
|
3.6
|
46.5
|
1.0
|
ND2
|
A:ASN154
|
3.8
|
53.6
|
1.0
|
CG2
|
A:THR156
|
3.9
|
49.1
|
1.0
|
CG
|
A:ASP152
|
4.0
|
45.9
|
1.0
|
N
|
A:GLN158
|
4.1
|
46.2
|
1.0
|
N
|
A:THR156
|
4.1
|
46.4
|
1.0
|
CA
|
A:GLN158
|
4.2
|
47.3
|
1.0
|
CB
|
A:GLN158
|
4.2
|
51.8
|
1.0
|
CA
|
A:THR156
|
4.3
|
46.6
|
1.0
|
N
|
A:ILE159
|
4.4
|
44.9
|
1.0
|
CA
|
A:ASP152
|
4.5
|
46.1
|
1.0
|
CA
|
A:ILE159
|
4.6
|
45.1
|
1.0
|
CB
|
A:ASP152
|
4.7
|
44.1
|
1.0
|
N
|
A:GLY157
|
4.8
|
43.3
|
1.0
|
C
|
A:THR156
|
4.8
|
44.7
|
1.0
|
OD2
|
A:ASP152
|
4.8
|
45.7
|
1.0
|
C
|
A:ASP152
|
5.0
|
50.0
|
1.0
|
CB
|
A:ASN154
|
5.0
|
55.6
|
1.0
|
N
|
A:ASN154
|
5.0
|
55.6
|
1.0
|
|
Calcium binding site 6 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 6 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca201
b:45.9
occ:1.00
|
O
|
B:ALA14
|
2.2
|
55.6
|
1.0
|
OD1
|
B:ASP17
|
2.3
|
60.4
|
1.0
|
O
|
B:HOH324
|
2.3
|
45.2
|
1.0
|
O
|
B:GLU19
|
2.4
|
46.5
|
1.0
|
OE1
|
B:GLU24
|
2.4
|
43.4
|
1.0
|
OE2
|
B:GLU24
|
2.5
|
47.8
|
1.0
|
O
|
B:HOH316
|
2.6
|
52.7
|
1.0
|
CD
|
B:GLU24
|
2.8
|
43.8
|
1.0
|
C
|
B:ALA14
|
3.3
|
55.4
|
1.0
|
CG
|
B:ASP17
|
3.3
|
62.7
|
1.0
|
C
|
B:GLU19
|
3.7
|
47.9
|
1.0
|
OD2
|
B:ASP17
|
3.8
|
62.4
|
1.0
|
CA
|
B:ALA14
|
3.8
|
54.3
|
1.0
|
CG
|
B:GLU24
|
4.3
|
42.3
|
1.0
|
N
|
B:SER21
|
4.4
|
40.0
|
1.0
|
N
|
B:GLU19
|
4.4
|
55.6
|
1.0
|
N
|
B:GLY15
|
4.4
|
55.0
|
1.0
|
CA
|
B:VAL20
|
4.5
|
42.9
|
1.0
|
N
|
B:VAL20
|
4.6
|
44.0
|
1.0
|
CB
|
B:ALA14
|
4.6
|
55.8
|
1.0
|
CB
|
B:ASP17
|
4.6
|
65.8
|
1.0
|
N
|
B:ASP17
|
4.6
|
68.6
|
1.0
|
CA
|
B:GLU19
|
4.7
|
52.2
|
1.0
|
O
|
B:LEU13
|
4.7
|
52.3
|
1.0
|
N
|
B:MET18
|
4.8
|
67.4
|
1.0
|
CA
|
B:GLY15
|
4.9
|
60.2
|
1.0
|
C
|
B:VAL20
|
4.9
|
40.2
|
1.0
|
CB
|
B:SER21
|
5.0
|
40.3
|
1.0
|
OG
|
B:SER21
|
5.0
|
40.1
|
1.0
|
C
|
B:GLY15
|
5.0
|
62.9
|
1.0
|
CA
|
B:ASP17
|
5.0
|
66.2
|
1.0
|
|
Calcium binding site 7 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 7 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca202
b:51.5
occ:1.00
|
OD1
|
B:ASP59
|
2.2
|
60.9
|
1.0
|
O
|
B:LYS63
|
2.2
|
43.2
|
1.0
|
OD1
|
B:ASP57
|
2.4
|
49.3
|
1.0
|
OE1
|
B:GLU68
|
2.4
|
54.1
|
1.0
|
O
|
B:HOH301
|
2.5
|
38.3
|
1.0
|
OG1
|
B:THR61
|
2.5
|
50.2
|
1.0
|
OE2
|
B:GLU68
|
2.9
|
56.7
|
1.0
|
CD
|
B:GLU68
|
3.0
|
53.6
|
1.0
|
CG
|
B:ASP59
|
3.2
|
57.7
|
1.0
|
OD2
|
B:ASP59
|
3.5
|
58.6
|
1.0
|
C
|
B:LYS63
|
3.5
|
44.1
|
1.0
|
CG
|
B:ASP57
|
3.6
|
48.0
|
1.0
|
CB
|
B:THR61
|
3.7
|
50.5
|
1.0
|
CG2
|
B:THR61
|
4.0
|
53.7
|
1.0
|
N
|
B:THR61
|
4.0
|
46.1
|
1.0
|
N
|
B:GLY65
|
4.1
|
43.8
|
1.0
|
OE1
|
B:GLU19
|
4.1
|
59.0
|
1.0
|
OE2
|
B:GLU19
|
4.3
|
61.0
|
1.0
|
CA
|
B:ASP57
|
4.3
|
50.8
|
1.0
|
N
|
B:LYS63
|
4.3
|
45.6
|
1.0
|
CA
|
B:LEU64
|
4.3
|
43.7
|
1.0
|
N
|
B:LEU64
|
4.3
|
43.4
|
1.0
|
CB
|
B:ASP57
|
4.4
|
49.3
|
1.0
|
CA
|
B:THR61
|
4.4
|
47.9
|
1.0
|
OD2
|
B:ASP57
|
4.4
|
45.8
|
1.0
|
CG
|
B:GLU68
|
4.5
|
49.9
|
1.0
|
CA
|
B:LYS63
|
4.5
|
44.9
|
1.0
|
CB
|
B:ASP59
|
4.5
|
56.2
|
1.0
|
CD
|
B:GLU19
|
4.6
|
58.8
|
1.0
|
C
|
B:LEU64
|
4.6
|
44.7
|
1.0
|
N
|
B:ASP59
|
4.6
|
56.0
|
1.0
|
C
|
B:ASP57
|
4.7
|
57.4
|
1.0
|
N
|
B:THR60
|
4.7
|
49.9
|
1.0
|
N
|
B:GLY62
|
4.8
|
45.2
|
1.0
|
C
|
B:ASP59
|
4.8
|
53.3
|
1.0
|
C
|
B:THR61
|
4.9
|
46.1
|
1.0
|
CA
|
B:ASP59
|
4.9
|
56.4
|
1.0
|
N
|
B:SER58
|
4.9
|
63.9
|
1.0
|
|
Calcium binding site 8 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 8 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca203
b:37.3
occ:1.00
|
O
|
B:HOH310
|
2.3
|
38.6
|
1.0
|
OD1
|
B:ASP87
|
2.4
|
36.2
|
1.0
|
O
|
B:THR93
|
2.4
|
31.2
|
1.0
|
OG
|
B:SER91
|
2.4
|
33.2
|
1.0
|
OD1
|
B:ASP89
|
2.4
|
45.2
|
1.0
|
OE1
|
B:GLU98
|
2.5
|
32.5
|
1.0
|
OE2
|
B:GLU98
|
2.6
|
33.6
|
1.0
|
CD
|
B:GLU98
|
2.9
|
34.2
|
1.0
|
CG
|
B:ASP89
|
3.4
|
42.4
|
1.0
|
CG
|
B:ASP87
|
3.5
|
34.8
|
1.0
|
CB
|
B:SER91
|
3.5
|
34.1
|
1.0
|
C
|
B:THR93
|
3.6
|
32.4
|
1.0
|
OD2
|
B:ASP89
|
3.8
|
44.1
|
1.0
|
N
|
B:SER91
|
4.0
|
34.9
|
1.0
|
CA
|
B:ASP87
|
4.1
|
36.0
|
1.0
|
OG1
|
B:THR93
|
4.1
|
33.5
|
1.0
|
N
|
B:GLY95
|
4.2
|
34.9
|
1.0
|
CB
|
B:ASP87
|
4.3
|
35.1
|
1.0
|
OD2
|
B:ASP87
|
4.4
|
33.5
|
1.0
|
CA
|
B:SER91
|
4.4
|
35.2
|
1.0
|
C
|
B:ASP87
|
4.4
|
37.4
|
1.0
|
N
|
B:ILE94
|
4.4
|
32.2
|
1.0
|
N
|
B:THR93
|
4.4
|
33.2
|
1.0
|
N
|
B:ASP89
|
4.4
|
40.5
|
1.0
|
CG
|
B:GLU98
|
4.4
|
33.5
|
1.0
|
CA
|
B:ILE94
|
4.4
|
33.7
|
1.0
|
CA
|
B:THR93
|
4.5
|
32.4
|
1.0
|
OD1
|
B:ASN128
|
4.6
|
44.6
|
1.0
|
CB
|
B:ASP89
|
4.6
|
41.7
|
1.0
|
N
|
B:ARG90
|
4.6
|
37.7
|
1.0
|
N
|
B:THR88
|
4.6
|
41.2
|
1.0
|
C
|
B:ILE94
|
4.8
|
34.3
|
1.0
|
CA
|
B:ASP89
|
4.8
|
40.7
|
1.0
|
O
|
B:HOH308
|
4.8
|
42.2
|
1.0
|
C
|
B:ASP89
|
4.9
|
38.1
|
1.0
|
O
|
B:ASP87
|
4.9
|
37.8
|
1.0
|
N
|
B:GLY92
|
5.0
|
32.6
|
1.0
|
CB
|
B:THR93
|
5.0
|
32.5
|
1.0
|
C
|
B:SER91
|
5.0
|
33.3
|
1.0
|
|
Calcium binding site 9 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 9 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca204
b:37.7
occ:1.00
|
O
|
A:HOH313
|
2.2
|
44.9
|
1.0
|
OD2
|
B:ASP130
|
2.3
|
39.4
|
1.0
|
ND2
|
B:ASN133
|
2.4
|
34.2
|
1.0
|
OD1
|
B:ASP42
|
2.4
|
44.9
|
1.0
|
OD1
|
B:ASP130
|
2.5
|
36.0
|
1.0
|
O
|
B:HOH325
|
2.5
|
43.9
|
1.0
|
OD1
|
B:ASP132
|
2.5
|
37.5
|
1.0
|
OD2
|
B:ASP132
|
2.6
|
37.9
|
1.0
|
CG
|
B:ASP130
|
2.8
|
35.2
|
1.0
|
CG
|
B:ASP132
|
2.9
|
34.5
|
1.0
|
CG
|
B:ASN133
|
3.3
|
35.3
|
1.0
|
CG
|
B:ASP42
|
3.3
|
46.9
|
1.0
|
OD2
|
B:ASP42
|
3.7
|
54.7
|
1.0
|
OD1
|
B:ASN133
|
3.9
|
42.1
|
1.0
|
N
|
B:ASN133
|
4.1
|
33.3
|
1.0
|
CB
|
B:ASN133
|
4.2
|
34.8
|
1.0
|
CB
|
B:ASP130
|
4.3
|
33.3
|
1.0
|
CB
|
B:ASP132
|
4.3
|
33.1
|
1.0
|
O
|
B:HOH321
|
4.4
|
39.4
|
1.0
|
N
|
B:ASP42
|
4.4
|
38.8
|
1.0
|
CB
|
B:ASP42
|
4.6
|
44.7
|
1.0
|
OD1
|
A:ASP47
|
4.6
|
58.7
|
1.0
|
NH1
|
A:ARG50
|
4.6
|
52.5
|
1.0
|
CA
|
B:ASN133
|
4.7
|
32.7
|
1.0
|
O
|
B:GLY43
|
4.7
|
40.6
|
1.0
|
OG1
|
B:THR41
|
4.8
|
37.3
|
1.0
|
O
|
B:HOH323
|
4.8
|
40.4
|
1.0
|
C
|
B:ASP132
|
4.9
|
34.5
|
1.0
|
N
|
B:ASP132
|
5.0
|
34.1
|
1.0
|
CA
|
B:ASP132
|
5.0
|
34.3
|
1.0
|
|
Calcium binding site 10 out
of 20 in 6qlb
Go back to
Calcium Binding Sites List in 6qlb
Calcium binding site 10 out
of 20 in the Calpain Small Subunit 1, Rna-Binding Protein Hfq
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Calpain Small Subunit 1, Rna-Binding Protein Hfq within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca205
b:0.5
occ:1.00
|
OD1
|
B:ASN154
|
2.3
|
59.8
|
1.0
|
O
|
B:HOH338
|
2.4
|
42.2
|
1.0
|
OG1
|
B:THR156
|
2.5
|
44.3
|
1.0
|
O
|
B:GLN158
|
2.8
|
45.2
|
1.0
|
OD1
|
B:ASP152
|
3.0
|
43.5
|
1.0
|
CG
|
B:ASN154
|
3.2
|
61.8
|
1.0
|
ND2
|
B:ASN154
|
3.3
|
60.2
|
1.0
|
CB
|
B:THR156
|
3.7
|
47.5
|
1.0
|
OE1
|
B:GLN158
|
3.8
|
64.2
|
1.0
|
CG2
|
B:THR156
|
3.9
|
49.1
|
1.0
|
C
|
B:GLN158
|
3.9
|
46.3
|
1.0
|
CG
|
B:ASP152
|
4.2
|
42.4
|
1.0
|
N
|
B:THR156
|
4.3
|
49.1
|
1.0
|
CG
|
B:GLN158
|
4.3
|
57.4
|
1.0
|
CD
|
B:GLN158
|
4.5
|
64.8
|
1.0
|
CA
|
B:THR156
|
4.5
|
47.0
|
1.0
|
N
|
B:GLN158
|
4.5
|
44.6
|
1.0
|
OE1
|
B:GLN160
|
4.6
|
79.2
|
1.0
|
CA
|
B:ASP152
|
4.6
|
44.7
|
1.0
|
CB
|
B:ASN154
|
4.6
|
62.9
|
1.0
|
CA
|
B:GLN158
|
4.7
|
47.0
|
1.0
|
N
|
B:ASN154
|
4.7
|
61.0
|
1.0
|
O
|
B:HOH328
|
4.7
|
48.6
|
1.0
|
N
|
B:ILE159
|
4.8
|
46.5
|
1.0
|
CB
|
B:ASP152
|
4.9
|
42.5
|
1.0
|
CB
|
B:GLN158
|
4.9
|
50.3
|
1.0
|
N
|
B:GLY155
|
5.0
|
53.1
|
1.0
|
C
|
B:ASP152
|
5.0
|
48.7
|
1.0
|
|
Reference:
P.J.Rizkallah,
J.O.Cresser-Brown.
Calpain Small Subunit 1, Rna-Binding Protein Hfq Acta Crystallogr.,Sect.F.
ISSN: ESSN 1744-3091
Page generated: Tue Jul 16 13:53:55 2024
|