Atomistry » Calcium » PDB 7brv-7c45 » 7c23
Atomistry »
  Calcium »
    PDB 7brv-7c45 »
      7c23 »

Calcium in PDB 7c23: Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase

Protein crystallography data

The structure of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase, PDB code: 7c23 was solved by Z.Li, J.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.82 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 116.655, 37.019, 99.747, 90.00, 99.06, 90.00
R / Rfree (%) 16.3 / 19.5

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase (pdb code 7c23). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase, PDB code: 7c23:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 1 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:19.4
occ:1.00
 O A:HOH477 2.3 19.9 1.0
OD2 A:ASP200 2.3 17.5 1.0
OE2 B:GLU159 2.4 20.8 1.0
O B:HOH413 2.4 19.6 1.0
CD B:GLU159 3.4 25.2 1.0
CG A:ASP200 3.5 17.5 1.0
OE1 B:GLU159 3.7 22.1 1.0
HB3 A:ASP200 3.7 18.2 1.0
HA A:ARG201 3.9 17.2 1.0
CA A:CA303 3.9 18.1 1.0
OD2 A:ASP204 4.1 19.1 1.0
CB A:ASP200 4.2 15.2 1.0
HB2 A:ARG201 4.2 17.0 1.0
O B:HOH476 4.2 32.9 1.0
HD2 A:ARG201 4.2 26.7 1.0
HD3 A:ARG201 4.4 26.7 1.0
N A:ARG201 4.4 16.9 1.0
OD1 A:ASP200 4.5 19.7 1.0
CA A:ARG201 4.5 14.4 1.0
C A:ASP200 4.5 17.8 1.0
CG B:GLU159 4.6 24.5 1.0
H A:ARG201 4.7 20.3 1.0
HG3 A:GLN197 4.7 19.9 1.0
HG2 B:GLU159 4.7 29.4 1.0
CD A:ARG201 4.8 22.2 1.0
CB A:ARG201 4.8 14.2 1.0
O A:ASP200 4.8 17.9 1.0
HB2 A:ASP200 4.9 18.2 1.0
HG3 B:GLU159 4.9 29.4 1.0
O A:GLN197 4.9 17.4 1.0

Calcium binding site 2 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 2 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca302

b:19.6
occ:1.00
 O A:HOH441 2.3 20.8 1.0
OD1 A:ASP200 2.4 19.7 1.0
O A:HOH541 2.4 33.3 1.0
O A:HOH540 2.5 30.6 1.0
CG A:ASP200 3.6 17.5 1.0
HA A:ASP200 3.9 22.8 1.0
CA A:CA303 3.9 18.1 1.0
HB2 A:ASP200 4.0 18.2 1.0
CB A:ASP200 4.3 15.2 1.0
OD2 A:ASP203 4.5 32.9 1.0
CA A:ASP200 4.6 19.0 1.0
OD2 A:ASP200 4.6 17.5 1.0
OD1 A:ASP204 4.6 20.0 1.0
HB3 A:ASP203 4.7 22.9 1.0
O A:HOH440 4.9 26.4 1.0

Calcium binding site 3 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 3 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca303

b:18.1
occ:1.00
 OD2 A:ASP204 2.4 19.1 1.0
OD1 A:ASP200 2.5 19.7 1.0
OD2 A:ASP200 2.5 17.5 1.0
CG A:ASP200 2.9 17.5 1.0
CG A:ASP204 3.4 21.1 1.0
OD1 A:ASP204 3.8 20.0 1.0
CA A:CA301 3.9 19.4 1.0
CA A:CA302 3.9 19.6 1.0
O A:HOH477 4.0 19.9 1.0
O A:HOH441 4.1 20.8 1.0
CB A:ASP200 4.3 15.2 1.0
O A:HOH541 4.4 33.3 1.0
O A:ASP200 4.7 17.9 1.0
CB A:ASP204 4.7 21.6 1.0
HB2 A:ASP200 4.8 18.2 1.0
HB3 A:ASP200 4.8 18.2 1.0
HB2 A:ASP204 4.8 25.9 1.0
HA A:ASP200 5.0 22.8 1.0
HB3 A:ASP204 5.0 25.9 1.0

Calcium binding site 4 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 4 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca304

b:20.4
occ:1.00
 O A:HOH529 2.3 23.7 1.0
OD1 A:ASP123 2.4 20.0 1.0
O A:ASP120 2.4 21.2 1.0
OD1 A:ASP120 2.4 20.8 1.0
C A:ASP120 3.3 19.9 1.0
HA A:ASP123 3.5 24.4 1.0
CG A:ASP120 3.5 26.9 1.0
CG A:ASP123 3.6 28.4 1.0
HA A:ASP120 3.6 26.1 1.0
H A:ASP123 3.8 23.7 1.0
CA A:CA305 3.9 18.8 1.0
CA A:ASP120 3.9 21.8 1.0
CA A:CA306 4.0 21.3 1.0
HA A:GLN121 4.1 29.1 1.0
CA A:ASP123 4.2 20.4 1.0
CB A:ASP120 4.3 20.7 1.0
N A:GLN121 4.3 21.2 1.0
N A:ASP123 4.3 19.8 1.0
OD2 A:ASP120 4.5 23.3 1.0
OD2 A:ASP123 4.5 26.0 1.0
CB A:ASP123 4.5 22.8 1.0
CA A:GLN121 4.6 24.2 1.0
O A:HOH539 4.6 25.2 1.0
HB3 A:ASP120 4.7 24.8 1.0
O A:HOH553 4.8 36.4 1.0
C A:GLN121 4.9 33.7 1.0
HB3 A:ASP123 4.9 27.4 1.0

Calcium binding site 5 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 5 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca305

b:18.8
occ:1.00
 OD2 A:ASP123 2.4 26.0 1.0
O A:HOH539 2.4 25.2 1.0
OD1 A:ASP123 2.7 20.0 1.0
CG A:ASP123 2.8 28.4 1.0
CA A:CA304 3.9 20.4 1.0
CB A:ASP123 4.3 22.8 1.0
HB3 A:ASP123 4.5 27.4 1.0
O A:HOH529 4.6 23.7 1.0
O A:HOH463 4.7 32.4 1.0
HB2 A:ASP123 4.7 27.4 1.0
O A:HOH468 4.8 33.9 1.0

Calcium binding site 6 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 6 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca306

b:21.3
occ:1.00
 O A:HOH509 2.4 38.2 1.0
OD2 A:ASP120 2.4 23.3 1.0
O A:HOH518 2.6 32.2 1.0
OD1 A:ASP120 2.7 20.8 1.0
CG A:ASP120 2.9 26.9 1.0
CA A:CA304 4.0 20.4 1.0
O A:HOH529 4.3 23.7 1.0
O A:HOH418 4.3 32.2 1.0
CB A:ASP120 4.4 20.7 1.0
O A:HOH464 4.6 28.8 1.0
HB3 A:ASP120 4.8 24.8 1.0
HB2 A:ASP120 4.8 24.8 1.0
O A:HOH553 4.9 36.4 1.0

Calcium binding site 7 out of 7 in 7c23

Go back to Calcium Binding Sites List in 7c23
Calcium binding site 7 out of 7 in the Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of CRME10, A Sgnh-Hydrolase Family Esterase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca309

b:52.1
occ:1.00
 O A:HOH456 2.1 37.9 1.0
O A:HOH443 2.5 33.8 1.0
O A:ASP203 2.6 22.2 1.0
O A:HOH437 2.6 31.5 1.0
O A:LEU205 3.0 32.4 1.0
C A:ASP203 3.7 23.4 1.0
HA A:ASP203 4.1 23.8 1.0
C A:LEU205 4.1 35.2 1.0
H A:LEU205 4.2 29.6 1.0
N A:LEU205 4.3 24.7 1.0
HA A:ASP204 4.3 22.0 1.0
O A:HOH569 4.4 44.5 1.0
C A:ASP204 4.5 24.6 1.0
CA A:ASP203 4.5 19.8 1.0
O A:ILE202 4.5 17.9 1.0
N A:ASP204 4.6 16.8 1.0
HB2 A:LEU205 4.6 34.2 1.0
CA A:ASP204 4.7 18.4 1.0
OD1 A:ASP203 4.7 32.4 1.0
CA A:LEU205 4.7 24.1 1.0
O A:HOH453 4.8 26.6 1.0

Reference:

Z.Li, J.Li. C-Terminal Swapped Dimers Revealed A New Catalytic Mechanism of Sgnh-Hydrolase Family Esterase To Be Published.
Page generated: Thu Jul 18 23:25:38 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy