Calcium in PDB 7c2g: Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex

The structure of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex, PDB code: 7c2g was solved by R.C.Robinson, C.Akil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.86 / 1.71
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	52.854, 101.343, 55.765, 90.00, 96.62, 90.00
R / Rfree (%)	16.9 / 20.3

The binding sites of Calcium atom in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex (pdb code 7c2g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 7 binding sites of Calcium where determined in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex, PDB code: 7c2g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7;

Calcium binding site 1 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:9.4 occ:1.00 O2B A:ATP402 2.3 6.7 1.0 O3G A:ATP402 2.3 5.7 1.0 O A:HOH568 2.4 10.2 1.0 O A:HOH544 2.4 11.9 1.0 O A:HOH633 2.5 10.1 1.0 O A:HOH546 2.5 11.0 1.0 O A:HOH540 2.7 12.5 1.0 PG A:ATP402 3.5 7.2 1.0 PB A:ATP402 3.5 5.2 1.0 O1G A:ATP402 3.8 9.3 1.0 O3B A:ATP402 3.8 3.8 1.0 O A:HOH624 4.2 7.4 1.0 O3A A:ATP402 4.2 5.1 1.0 OE1 A:GLN137 4.3 9.2 1.0 O1A A:ATP402 4.3 7.6 1.0 CA A:GLY13 4.4 8.6 1.0 NZ A:LYS18 4.4 8.2 1.0 O A:HOH629 4.4 23.4 1.0 O A:HOH654 4.5 17.9 1.0 OD1 A:ASP154 4.5 18.1 1.0 OD2 A:ASP154 4.6 20.8 1.0 CD A:GLN137 4.6 8.7 1.0 OD2 A:ASP11 4.6 7.6 1.0 OD1 A:ASP11 4.7 8.4 1.0 O A:HOH584 4.7 17.8 1.0 PA A:ATP402 4.8 7.8 1.0 O1B A:ATP402 4.8 7.4 1.0 O2G A:ATP402 4.8 6.7 1.0 NE2 A:GLN137 5.0 10.1 1.0 CG A:ASP154 5.0 23.0 1.0

Calcium binding site 2 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca301 b:15.3 occ:1.00 O G:GLY26 2.3 16.7 1.0 OD1 G:ASP95 2.3 26.6 1.0 OD1 G:ASP27 2.4 18.0 1.0 O G:THR96 2.4 19.7 1.0 O G:HOH485 2.4 18.1 1.0 OE2 G:GLU49 2.5 18.2 1.0 OE1 G:GLU49 2.6 14.9 1.0 CD G:GLU49 2.9 20.7 1.0 C G:GLY26 3.3 17.1 1.0 C G:THR96 3.5 26.1 1.0 CG G:ASP95 3.5 34.7 1.0 CG G:ASP27 3.6 18.4 1.0 N G:THR96 3.6 21.3 1.0 CA G:ASP27 3.9 20.6 1.0 N G:ASP27 4.0 18.8 1.0 CA G:THR96 4.1 21.4 1.0 C G:ASP95 4.2 24.8 1.0 CA G:ASP95 4.3 23.6 1.0 CA G:GLY26 4.3 18.1 1.0 OD2 G:ASP95 4.3 34.4 1.0 CG G:GLU49 4.4 15.1 1.0 CB G:ASP27 4.4 19.6 1.0 O G:HOH414 4.4 35.5 1.0 O G:HOH431 4.4 14.8 1.0 OD2 G:ASP27 4.5 19.5 1.0 CB G:ASP95 4.5 27.0 1.0 CB G:THR96 4.5 25.3 1.0 O G:HOH449 4.6 18.3 1.0 N G:GLU97 4.6 20.1 1.0 CA G:SER45 4.7 18.8 1.0 OG1 G:THR46 4.7 16.7 1.0 CA G:GLU97 4.8 31.5 1.0 N G:GLY98 4.9 21.9 1.0 C G:GLU97 4.9 24.0 1.0 N G:THR46 5.0 14.2 1.0

Calcium binding site 3 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca302 b:34.1 occ:1.00 OD1 G:ASP138 2.2 31.1 1.0 O G:ASP137 2.2 30.1 1.0 O G:HOH509 2.2 25.8 1.0 OE2 G:GLU160 2.3 21.4 1.0 O G:HOH500 2.3 44.0 1.0 OE1 G:GLU160 2.5 23.6 1.0 CD G:GLU160 2.7 21.2 1.0 CG G:ASP138 3.4 26.2 1.0 C G:ASP137 3.4 27.9 1.0 O G:HOH418 3.7 43.5 1.0 ND1 G:HIS116 3.9 42.9 1.0 CA G:ASP138 3.9 25.3 1.0 N G:ASP138 4.1 26.6 1.0 CE1 G:HIS116 4.1 42.8 1.0 OD2 G:ASP138 4.2 30.0 1.0 CG G:GLU160 4.2 19.8 1.0 OD2 G:ASP137 4.2 49.6 1.0 CB G:ASP138 4.2 25.5 1.0 CG G:ASP137 4.3 45.7 1.0 CB G:ASP137 4.4 36.1 1.0 CA G:ASP137 4.5 28.1 1.0 N G:SER157 4.6 23.6 1.0 CA G:ALA156 4.7 26.7 1.0 OE2 G:GLU118 4.9 68.0 1.0 CG G:HIS116 4.9 39.2 1.0 OD1 G:ASP137 4.9 52.2 1.0

Calcium binding site 4 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca303 b:86.8 occ:1.00 OE1 A:GLU167 2.3 25.7 1.0 O G:GLY66 2.4 35.6 1.0 O A:HOH754 2.5 38.3 1.0 O G:ALA68 2.7 26.9 1.0 OD2 G:ASP61 2.7 42.0 1.0 OD1 G:ASP61 3.1 42.1 1.0 C G:GLY66 3.2 40.5 1.0 CG G:ASP61 3.3 38.6 1.0 CD A:GLU167 3.5 31.7 1.0 CA G:GLY66 3.6 40.7 1.0 C G:ALA68 3.9 26.9 1.0 N G:ALA68 4.0 35.7 1.0 OE2 A:GLU167 4.2 26.6 1.0 N G:HIS67 4.2 41.1 1.0 CG A:GLU167 4.6 27.4 1.0 CA G:ALA68 4.6 30.3 1.0 CB A:GLU167 4.7 16.9 1.0 C G:HIS67 4.7 45.6 1.0 CB G:ASP61 4.8 23.5 1.0 CA G:HIS67 4.8 47.4 1.0 N G:ASP69 4.9 23.6 1.0 O G:HOH437 4.9 39.1 1.0

Calcium binding site 5 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca304 b:30.5 occ:1.00 O G:ARG175 2.1 33.2 1.0 O G:ASP172 2.2 18.2 1.0 OE1 G:GLN179 2.2 27.1 1.0 OD1 G:ASP172 2.3 33.4 1.0 O G:GLY177 2.4 55.3 1.0 O G:HOH522 2.4 41.6 1.0 C G:ASP172 3.2 18.6 1.0 CD G:GLN179 3.3 31.6 1.0 C G:ARG175 3.3 29.8 1.0 O G:HOH513 3.4 52.7 1.0 CG G:ASP172 3.5 35.2 1.0 C G:GLY177 3.5 55.9 1.0 NE2 G:GLN179 3.8 33.3 1.0 CA G:ASP172 3.9 17.6 1.0 N G:GLN179 4.1 40.9 1.0 O G:HOH514 4.1 34.8 1.0 C G:VAL176 4.1 46.0 1.0 N G:GLY177 4.1 49.0 1.0 CA G:ARG175 4.2 22.3 1.0 N G:ARG175 4.2 19.0 1.0 CB G:ASP172 4.3 23.7 1.0 O G:VAL176 4.3 48.7 1.0 CB G:ARG175 4.3 25.8 1.0 CA G:VAL178 4.3 54.5 1.0 N G:ALA173 4.3 14.5 1.0 N G:VAL178 4.3 55.2 1.0 N G:VAL176 4.3 42.9 1.0 OD2 G:ASP172 4.4 39.4 1.0 CA G:GLY177 4.4 54.3 1.0 CA G:VAL176 4.5 47.0 1.0 C G:VAL178 4.5 49.6 1.0 CG G:GLN179 4.6 33.8 1.0 CA G:ALA173 4.6 14.9 1.0 C G:ALA173 4.7 20.8 1.0 CB G:GLN179 4.8 30.7 1.0 O G:ALA173 4.9 19.8 1.0

Calcium binding site 6 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca305 b:0.0 occ:1.00 O G:HOH436 2.4 38.1 1.0 O G:HOH480 2.4 29.4 1.0 O G:HOH423 2.4 39.4 1.0 OD2 G:ASP147 3.4 60.2 1.0 OG1 G:THR144 3.9 37.7 1.0 O G:THR144 4.1 35.0 1.0 OD1 G:ASP146 4.2 41.9 1.0 CB G:ASP146 4.3 39.1 1.0 OH G:TYR110 4.3 48.3 1.0 CB G:THR144 4.4 34.0 1.0 O G:HOH492 4.5 33.0 1.0 CG G:ASP147 4.6 56.9 1.0 CG G:ASP146 4.8 42.6 1.0 N G:ASP147 4.9 30.5 1.0

Calcium binding site 7 out of 7 in the Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of the Thorarchaeaota 2DGEL/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca306 b:66.0 occ:1.00 O G:HOH490 2.3 34.4 1.0 OD1 G:ASP19 2.3 47.9 1.0 O G:HOH420 2.4 53.3 1.0 O G:HOH530 2.4 57.6 1.0 CG2 G:THR2 3.1 82.8 1.0 OG1 G:THR2 3.4 82.8 1.0 O G:HOH465 3.5 47.7 1.0 CB G:THR2 3.5 82.5 1.0 CG G:ASP19 3.6 42.3 1.0 O G:HOH489 4.2 53.7 1.0 O G:PRO20 4.2 33.0 1.0 O G:HOH453 4.2 44.9 1.0 OD2 G:ASP19 4.3 45.8 1.0 CA G:ASP19 4.5 32.0 1.0 CB G:ASP19 4.6 35.4 1.0 C G:ASP19 4.7 30.6 1.0 CD G:PRO20 4.8 29.9 1.0 N G:PRO20 4.8 29.2 1.0

R.C.Robinson, C.Akil. Crystal Structure of the Thorarchaeaota Progel/Rabbit Actin Complex To Be Published.