Calcium in PDB 7c2h: Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex

The structure of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex, PDB code: 7c2h was solved by R.C.Robinson, C.Akil, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	31.21 / 2.35
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.915, 98.644, 62.448, 90.00, 94.02, 90.00
R / Rfree (%)	20.2 / 23.8

The binding sites of Calcium atom in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex (pdb code 7c2h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex, PDB code: 7c2h:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;

Calcium binding site 1 out of 6 in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:46.3 occ:1.00 O A:HOH508 2.2 50.7 1.0 O2B A:ATP402 2.3 38.6 1.0 O A:HOH511 2.3 39.3 1.0 O A:HOH529 2.4 26.2 1.0 O A:HOH564 2.5 50.8 1.0 O3G A:ATP402 2.5 38.4 1.0 O A:HOH553 2.7 63.3 1.0 PG A:ATP402 3.5 38.0 1.0 PB A:ATP402 3.6 38.8 1.0 O A:HOH536 3.7 61.8 1.0 O1G A:ATP402 3.7 38.2 1.0 OE1 A:GLN137 3.9 54.1 1.0 O3B A:ATP402 3.9 38.4 1.0 CA A:GLY13 4.2 47.0 1.0 O3A A:ATP402 4.3 39.1 1.0 O1A A:ATP402 4.3 37.9 1.0 O A:HOH550 4.4 34.3 1.0 OD1 A:ASP154 4.4 45.4 1.0 NZ A:LYS18 4.4 38.3 1.0 CD A:GLN137 4.5 54.3 1.0 PA A:ATP402 4.7 39.1 1.0 O A:HOH568 4.7 64.3 1.0 OD2 A:ASP11 4.7 41.8 1.0 OD1 A:ASP11 4.8 40.3 1.0 O1B A:ATP402 4.8 41.7 1.0 OD2 A:ASP154 4.9 48.3 1.0 O2G A:ATP402 4.9 38.3 1.0 O2A A:ATP402 5.0 39.4 1.0

Calcium binding site 2 out of 6 in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca301 b:46.4 occ:1.00 OD1 G:ASP95 2.3 58.3 1.0 OE2 G:GLU49 2.4 49.0 1.0 O G:THR96 2.4 57.5 1.0 OE1 G:GLU49 2.4 44.3 1.0 O G:HOH418 2.4 47.9 1.0 OD1 G:ASP27 2.4 53.3 1.0 O G:GLY26 2.5 49.5 1.0 CD G:GLU49 2.7 46.2 1.0 C G:THR96 3.5 60.8 1.0 C G:GLY26 3.5 48.0 1.0 CG G:ASP95 3.6 58.5 1.0 N G:THR96 3.6 60.2 1.0 CG G:ASP27 3.6 53.4 1.0 CA G:ASP27 4.0 46.0 1.0 CA G:THR96 4.1 63.5 1.0 C G:ASP95 4.1 60.6 1.0 N G:ASP27 4.2 46.3 1.0 CA G:ASP95 4.2 59.4 1.0 CG G:GLU49 4.2 46.1 1.0 O G:HOH416 4.3 35.8 1.0 OD2 G:ASP95 4.3 60.6 1.0 CB G:ASP27 4.4 49.8 1.0 CA G:GLY26 4.5 48.4 1.0 CB G:ASP95 4.5 59.7 1.0 CB G:THR96 4.5 66.9 1.0 OD2 G:ASP27 4.5 56.7 1.0 N G:GLU97 4.6 62.7 1.0 CA G:SER45 4.6 44.9 1.0 OG1 G:THR46 4.6 51.0 1.0 N G:THR46 4.8 44.4 1.0 CA G:GLU97 4.8 62.0 1.0 C G:GLU97 4.9 60.2 1.0 O G:ASP95 5.0 63.0 1.0 CB G:SER45 5.0 44.1 1.0

Calcium binding site 3 out of 6 in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca302 b:66.4 occ:1.00 OE1 A:GLU167 2.2 0.9 1.0 O G:ALA68 2.3 68.2 1.0 O G:GLY66 2.3 69.7 1.0 O G:HOH435 2.4 46.0 1.0 OD2 G:ASP61 2.6 59.4 1.0 O G:HOH436 2.8 63.5 1.0 OD1 G:ASP61 3.1 62.6 1.0 CG G:ASP61 3.2 60.6 1.0 CD A:GLU167 3.3 0.4 1.0 C G:GLY66 3.4 72.9 1.0 C G:ALA68 3.5 67.6 1.0 OE2 A:GLU167 3.8 0.8 1.0 N G:ALA68 4.0 71.6 1.0 CA G:GLY66 4.0 75.5 1.0 C G:LYS67 4.2 71.5 1.0 CA G:ALA68 4.3 69.7 1.0 N G:LYS67 4.4 75.2 1.0 N G:ASP69 4.5 65.5 1.0 O G:LYS67 4.5 69.6 1.0 CG A:GLU167 4.5 0.3 1.0 CA G:LYS67 4.6 74.8 1.0 CA G:ASP69 4.6 63.2 1.0 CB A:GLU167 4.7 95.4 1.0 CB G:ASP61 4.7 60.0 1.0 O G:HOH442 4.8 68.7 1.0 O A:HOH517 4.9 60.3 1.0

Calcium binding site 4 out of 6 in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca303 b:52.8 occ:1.00 O A:VAL30 2.2 78.8 1.0 OE2 G:GLU174 2.2 65.8 1.0 O G:HOH422 2.4 52.5 1.0 OE1 G:GLU174 2.5 65.7 1.0 O A:HOH512 2.5 59.5 1.0 O A:HOH566 2.5 59.6 1.0 CD G:GLU174 2.6 63.8 1.0 C A:VAL30 3.3 69.6 1.0 N A:VAL30 4.1 62.5 1.0 CG G:GLU174 4.1 58.9 1.0 CA A:VAL30 4.2 65.1 1.0 N A:PHE31 4.2 66.9 1.0 CA A:PHE31 4.3 62.0 1.0 OD2 A:ASP56 4.3 60.5 1.0 O G:HOH415 4.3 57.7 1.0 CB A:PHE31 4.4 59.9 1.0 CB A:VAL30 4.6 63.6 1.0 OD1 A:ASP56 4.7 60.2 1.0 OE2 A:GLU93 4.8 55.0 1.0 O A:HOH528 4.9 36.3 1.0 CG A:ASP56 5.0 60.4 1.0

Calcium binding site 5 out of 6 in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca304 b:65.6 occ:1.00 O G:HOH414 2.3 78.0 1.0 OE1 G:GLU160 2.5 63.0 1.0 OD1 G:ASP138 2.5 67.9 1.0 O G:ASP137 2.5 69.5 1.0 OE2 G:GLU160 2.7 63.2 1.0 O G:HOH437 2.8 57.7 1.0 ND1 G:HIS116 2.9 82.1 1.0 CD G:GLU160 2.9 61.4 1.0 CE1 G:HIS116 3.2 86.9 1.0 C G:ASP137 3.5 69.6 1.0 CG G:ASP138 3.7 66.7 1.0 CA G:ASP138 4.0 64.9 1.0 OD2 G:ASP137 4.1 75.8 1.0 N G:ASP138 4.2 67.7 1.0 CG G:HIS116 4.2 81.4 1.0 CB G:ASP138 4.4 64.8 1.0 CG G:GLU160 4.4 58.6 1.0 NE2 G:HIS116 4.5 90.1 1.0 CB G:ASP137 4.5 74.6 1.0 CG G:ASP137 4.5 74.8 1.0 CA G:ASP137 4.5 72.1 1.0 N G:THR157 4.6 57.8 1.0 CA G:ALA156 4.6 56.9 1.0 OD2 G:ASP138 4.7 68.5 1.0 OG1 G:THR157 4.7 62.0 1.0 O G:ASP155 4.8 62.2 1.0 CA G:HIS116 4.8 73.1 1.0 N G:ARG117 4.8 78.1 1.0 CB G:HIS116 4.9 76.9 1.0 O G:ARG117 4.9 88.0 1.0 CD2 G:HIS116 5.0 86.8 1.0

Calcium binding site 6 out of 6 in the Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca305 b:57.0 occ:1.00 OE1 G:GLN179 2.3 54.3 1.0 O G:HOH417 2.3 55.4 1.0 O G:ASP172 2.4 51.0 1.0 O G:GLY177 2.5 62.3 1.0 O G:ARG175 2.5 52.6 1.0 OD1 G:ASP172 2.6 54.0 1.0 CD G:GLN179 3.4 56.8 1.0 C G:ASP172 3.4 50.1 1.0 C G:GLY177 3.6 66.2 1.0 CG G:ASP172 3.6 52.5 1.0 C G:ARG175 3.7 52.6 1.0 NE2 G:GLN179 3.9 57.6 1.0 CA G:ASP172 4.0 50.1 1.0 N G:GLN179 4.2 71.8 1.0 C G:VAL176 4.3 56.2 1.0 O G:VAL176 4.3 55.6 1.0 N G:GLY177 4.4 59.0 1.0 CA G:VAL178 4.4 73.7 1.0 CB G:ASP172 4.4 50.5 1.0 N G:VAL178 4.4 72.8 1.0 OD2 G:ASP172 4.5 53.1 1.0 CA G:ARG175 4.5 51.0 1.0 N G:ARG175 4.6 49.4 1.0 N G:ALA173 4.6 49.8 1.0 CA G:GLY177 4.6 63.9 1.0 N G:VAL176 4.6 53.9 1.0 CB G:ARG175 4.6 51.6 1.0 CG G:GLN179 4.7 59.6 1.0 C G:VAL178 4.7 74.7 1.0 CA G:VAL176 4.7 54.9 1.0 CA G:ALA173 4.9 50.8 1.0 CB G:GLN179 4.9 62.8 1.0 C G:ALA173 5.0 52.3 1.0

R.C.Robinson, C.Akil. Crystal Structure of the Thorarchaeaota 2DGEL3/Rabbit Actin Complex To Be Published.