Atomistry » Calcium » PDB 7pod-7qfy » 7pxg
Atomistry »
  Calcium »
    PDB 7pod-7qfy »
      7pxg »

Calcium in PDB 7pxg: Verruculogen-Bound Drosophila Slo Channel

Other elements in 7pxg:

The structure of Verruculogen-Bound Drosophila Slo Channel also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Potassium (K) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Verruculogen-Bound Drosophila Slo Channel (pdb code 7pxg). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Verruculogen-Bound Drosophila Slo Channel, PDB code: 7pxg:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 1 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2002

b:43.2
occ:1.00
O A:ASP980 2.4 48.0 1.0
OD2 A:ASP985 2.4 57.5 1.0
OD1 A:ASP983 2.5 55.3 1.0
OD1 A:ASP985 2.5 57.5 1.0
O A:GLN977 2.5 42.4 1.0
OD1 C:ASN463 2.5 36.8 1.0
CG A:ASP985 2.8 57.5 1.0
ND2 C:ASN463 3.0 36.8 1.0
CG C:ASN463 3.1 36.8 1.0
CG A:ASP983 3.5 55.3 1.0
C A:ASP980 3.6 48.0 1.0
C A:GLN977 3.7 42.4 1.0
O A:ASP983 3.9 55.3 1.0
OD2 A:ASP983 3.9 55.3 1.0
CA A:GLN981 4.2 49.0 1.0
CA A:GLN977 4.3 42.4 1.0
N A:GLN981 4.3 49.0 1.0
CB A:ASP985 4.3 57.5 1.0
C A:GLN981 4.5 49.0 1.0
O A:GLN981 4.5 49.0 1.0
C A:ASP983 4.5 55.3 1.0
CA A:ASP980 4.6 48.0 1.0
CB C:ASN463 4.6 36.8 1.0
CB A:ASP983 4.7 55.3 1.0
CB A:GLN977 4.7 42.4 1.0
N A:ASP980 4.7 48.0 1.0
N A:PHE978 4.8 45.4 1.0
N A:ASP983 4.8 55.3 1.0
CA A:ASP983 4.9 55.3 1.0
O C:ASN463 4.9 36.8 1.0
N A:ASP985 5.0 57.5 1.0
CB A:ASP980 5.0 48.0 1.0
CA A:PHE978 5.0 45.4 1.0

Calcium binding site 2 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 2 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2003

b:49.5
occ:1.00
O A:ARG528 2.4 49.0 1.0
O A:GLN616 2.4 49.6 1.0
O A:GLY548 2.5 45.5 1.0
OD2 A:ASP381 2.5 53.7 1.0
OE1 A:GLU550 2.5 47.5 1.0
OE2 A:GLU550 2.8 47.5 1.0
CD A:GLU550 3.0 47.5 1.0
CG A:ASP381 3.4 53.7 1.0
C A:GLY548 3.5 45.5 1.0
C A:GLN616 3.6 49.6 1.0
C A:ARG528 3.6 49.0 1.0
CA A:GLY548 3.9 45.5 1.0
OD1 A:ASP381 3.9 53.7 1.0
CA A:GLN616 4.2 49.6 1.0
CB A:ASP381 4.3 53.7 1.0
CA A:SER529 4.3 61.8 1.0
N A:SER529 4.4 61.8 1.0
N A:ARG528 4.4 49.0 1.0
NE2 A:GLN616 4.4 49.6 1.0
CG A:GLU550 4.5 47.5 1.0
CA A:ARG528 4.6 49.0 1.0
N A:SER617 4.6 54.0 1.0
OH A:TYR552 4.6 51.7 1.0
N A:MET549 4.7 48.4 1.0
CB A:GLN616 4.8 49.6 1.0
CA A:SER617 4.9 54.0 1.0
CD A:GLN616 5.0 49.6 1.0
N A:PHE530 5.0 68.4 1.0

Calcium binding site 3 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 3 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2002

b:42.1
occ:1.00
O B:ASP980 2.4 48.4 1.0
OD2 B:ASP985 2.4 58.2 1.0
OD1 B:ASP983 2.5 55.3 1.0
OD1 D:ASN463 2.5 39.1 1.0
OD1 B:ASP985 2.5 58.2 1.0
O B:GLN977 2.5 41.8 1.0
CG B:ASP985 2.8 58.2 1.0
ND2 D:ASN463 3.2 39.1 1.0
CG D:ASN463 3.2 39.1 1.0
CG B:ASP983 3.5 55.3 1.0
C B:ASP980 3.6 48.4 1.0
C B:GLN977 3.7 41.8 1.0
O B:ASP983 3.9 55.3 1.0
OD2 B:ASP983 3.9 55.3 1.0
CA B:GLN981 4.2 49.5 1.0
CA B:GLN977 4.3 41.8 1.0
N B:GLN981 4.3 49.5 1.0
CB B:ASP985 4.3 58.2 1.0
C B:GLN981 4.5 49.5 1.0
O B:GLN981 4.5 49.5 1.0
C B:ASP983 4.5 55.3 1.0
CA B:ASP980 4.6 48.4 1.0
CB B:ASP983 4.7 55.3 1.0
O D:ASN463 4.7 39.1 1.0
CB D:ASN463 4.7 39.1 1.0
CB B:GLN977 4.7 41.8 1.0
N B:ASP980 4.7 48.4 1.0
N B:PHE978 4.8 40.3 1.0
N B:ASP983 4.8 55.3 1.0
CA B:ASP983 4.9 55.3 1.0
N B:ASP985 5.0 58.2 1.0
CB B:ASP980 5.0 48.4 1.0
CA B:PHE978 5.0 40.3 1.0

Calcium binding site 4 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 4 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca2003

b:50.5
occ:1.00
O B:ARG528 2.4 49.8 1.0
O B:GLN616 2.4 49.2 1.0
O B:GLY548 2.5 46.8 1.0
OD2 B:ASP381 2.5 54.6 1.0
OE1 B:GLU550 2.5 48.2 1.0
OE2 B:GLU550 2.8 48.2 1.0
CD B:GLU550 3.0 48.2 1.0
CG B:ASP381 3.4 54.6 1.0
C B:GLY548 3.5 46.8 1.0
C B:GLN616 3.5 49.2 1.0
C B:ARG528 3.6 49.8 1.0
CA B:GLY548 3.9 46.8 1.0
OD1 B:ASP381 3.9 54.6 1.0
CA B:GLN616 4.2 49.2 1.0
CB B:ASP381 4.3 54.6 1.0
CA B:SER529 4.3 61.5 1.0
N B:SER529 4.4 61.5 1.0
N B:ARG528 4.4 49.8 1.0
NE2 B:GLN616 4.4 49.2 1.0
CG B:GLU550 4.5 48.2 1.0
CA B:ARG528 4.6 49.8 1.0
N B:SER617 4.6 54.5 1.0
OH B:TYR552 4.6 50.6 1.0
N B:MET549 4.7 48.6 1.0
CB B:GLN616 4.8 49.2 1.0
CA B:SER617 4.9 54.5 1.0
CD B:GLN616 5.0 49.2 1.0
N B:PHE530 5.0 69.9 1.0

Calcium binding site 5 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 5 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1203

b:42.3
occ:1.00
O C:ASP980 2.4 47.5 1.0
OD2 C:ASP985 2.4 57.6 1.0
OD1 C:ASP983 2.5 55.6 1.0
OD1 B:ASN463 2.5 39.3 1.0
OD1 C:ASP985 2.5 57.6 1.0
O C:GLN977 2.5 41.8 1.0
CG C:ASP985 2.8 57.6 1.0
ND2 B:ASN463 3.1 39.3 1.0
CG B:ASN463 3.2 39.3 1.0
CG C:ASP983 3.5 55.6 1.0
C C:ASP980 3.6 47.5 1.0
C C:GLN977 3.7 41.8 1.0
O C:ASP983 3.9 55.6 1.0
OD2 C:ASP983 3.9 55.6 1.0
CA C:GLN981 4.2 49.2 1.0
CA C:GLN977 4.3 41.8 1.0
N C:GLN981 4.3 49.2 1.0
CB C:ASP985 4.3 57.6 1.0
C C:GLN981 4.5 49.2 1.0
O C:GLN981 4.5 49.2 1.0
C C:ASP983 4.5 55.6 1.0
CA C:ASP980 4.6 47.5 1.0
CB C:ASP983 4.7 55.6 1.0
CB B:ASN463 4.7 39.3 1.0
CB C:GLN977 4.7 41.8 1.0
N C:ASP980 4.7 47.5 1.0
N C:PHE978 4.8 44.4 1.0
N C:ASP983 4.8 55.6 1.0
O B:ASN463 4.9 39.3 1.0
CA C:ASP983 4.9 55.6 1.0
N C:ASP985 5.0 57.6 1.0
CB C:ASP980 5.0 47.5 1.0
CA C:PHE978 5.0 44.4 1.0

Calcium binding site 6 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 6 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1204

b:50.5
occ:1.00
O C:ARG528 2.4 50.8 1.0
O C:GLN616 2.4 49.3 1.0
O C:GLY548 2.5 47.1 1.0
OD2 C:ASP381 2.5 54.6 1.0
OE1 C:GLU550 2.5 48.2 1.0
OE2 C:GLU550 2.8 48.2 1.0
CD C:GLU550 3.0 48.2 1.0
CG C:ASP381 3.4 54.6 1.0
C C:GLY548 3.5 47.1 1.0
C C:GLN616 3.6 49.3 1.0
C C:ARG528 3.6 50.8 1.0
CA C:GLY548 3.9 47.1 1.0
OD1 C:ASP381 3.9 54.6 1.0
CA C:GLN616 4.2 49.3 1.0
CB C:ASP381 4.3 54.6 1.0
CA C:SER529 4.3 63.3 1.0
N C:SER529 4.4 63.3 1.0
N C:ARG528 4.4 50.8 1.0
NE2 C:GLN616 4.4 49.3 1.0
CG C:GLU550 4.5 48.2 1.0
CA C:ARG528 4.6 50.8 1.0
N C:SER617 4.6 54.5 1.0
OH C:TYR552 4.6 51.1 1.0
N C:MET549 4.7 49.1 1.0
CB C:GLN616 4.8 49.3 1.0
CA C:SER617 4.9 54.5 1.0
CD C:GLN616 5.0 49.3 1.0
N C:PHE530 5.0 70.0 1.0

Calcium binding site 7 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 7 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca2002

b:43.6
occ:1.00
O D:ASP980 2.4 49.1 1.0
OD2 D:ASP985 2.4 58.7 1.0
OD1 D:ASP983 2.5 56.3 1.0
OD1 D:ASP985 2.5 58.7 1.0
O D:GLN977 2.5 43.3 1.0
OD1 A:ASN463 2.7 36.4 1.0
CG D:ASP985 2.8 58.7 1.0
ND2 A:ASN463 3.4 36.4 1.0
CG A:ASN463 3.4 36.4 1.0
CG D:ASP983 3.5 56.3 1.0
C D:ASP980 3.6 49.1 1.0
C D:GLN977 3.7 43.3 1.0
O D:ASP983 3.9 56.3 1.0
OD2 D:ASP983 3.9 56.3 1.0
CA D:GLN981 4.2 50.2 1.0
CA D:GLN977 4.3 43.3 1.0
N D:GLN981 4.3 50.2 1.0
CB D:ASP985 4.3 58.7 1.0
C D:GLN981 4.5 50.2 1.0
O D:GLN981 4.5 50.2 1.0
C D:ASP983 4.5 56.3 1.0
CA D:ASP980 4.6 49.1 1.0
CB D:ASP983 4.7 56.3 1.0
CB D:GLN977 4.7 43.3 1.0
N D:ASP980 4.7 49.1 1.0
N D:PHE978 4.8 47.8 1.0
N D:ASP983 4.8 56.3 1.0
CA D:ASP983 4.9 56.3 1.0
CB A:ASN463 4.9 36.4 1.0
O A:ASN463 4.9 36.4 1.0
N D:ASP985 5.0 58.7 1.0
CB D:ASP980 5.0 49.1 1.0
CA D:PHE978 5.0 47.8 1.0

Calcium binding site 8 out of 8 in 7pxg

Go back to Calcium Binding Sites List in 7pxg
Calcium binding site 8 out of 8 in the Verruculogen-Bound Drosophila Slo Channel


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Verruculogen-Bound Drosophila Slo Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca2003

b:48.8
occ:1.00
O D:ARG528 2.4 50.1 1.0
O D:GLN616 2.4 50.7 1.0
O D:GLY548 2.5 47.9 1.0
OD2 D:ASP381 2.5 54.1 1.0
OE1 D:GLU550 2.5 48.6 1.0
OE2 D:GLU550 2.8 48.6 1.0
CD D:GLU550 3.0 48.6 1.0
CG D:ASP381 3.4 54.1 1.0
C D:GLY548 3.5 47.9 1.0
C D:GLN616 3.5 50.7 1.0
C D:ARG528 3.6 50.1 1.0
CA D:GLY548 3.9 47.9 1.0
OD1 D:ASP381 3.9 54.1 1.0
CA D:GLN616 4.2 50.7 1.0
CB D:ASP381 4.3 54.1 1.0
CA D:SER529 4.3 61.6 1.0
N D:SER529 4.4 61.6 1.0
N D:ARG528 4.4 50.1 1.0
NE2 D:GLN616 4.4 50.7 1.0
CG D:GLU550 4.5 48.6 1.0
CA D:ARG528 4.6 50.1 1.0
N D:SER617 4.6 55.5 1.0
OH D:TYR552 4.6 52.4 1.0
N D:MET549 4.7 50.3 1.0
CB D:GLN616 4.8 50.7 1.0
CA D:SER617 4.9 55.5 1.0
CD D:GLN616 5.0 50.7 1.0
N D:PHE530 5.0 70.0 1.0

Reference:

T.Raisch, A.Brockmann, U.Ebbinghaus-Kintscher, J.Freigang, O.Gutbrod, J.Kubicek, B.Maertens, O.Hofnagel, S.Raunser. Small Molecule Modulation of the Drosophila Slo Channel Elucidated By Cryo-Em To Be Published.
DOI: 10.1038/S41467-021-27435-W
Page generated: Fri Jul 19 03:19:59 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy