Calcium in PDB 7qfy: Fusarium Oxysporum M36 Protease Without the Propeptide

The structure of Fusarium Oxysporum M36 Protease Without the Propeptide, PDB code: 7qfy was solved by C.Wilkens, J.Qiu, A.S.Meyer, J.P.Morth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.57 / 1.62
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	57.371, 57.371, 105.895, 90, 90, 90
R / Rfree (%)	14.8 / 17.3

The structure of Fusarium Oxysporum M36 Protease Without the Propeptide also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Calcium atom in the Fusarium Oxysporum M36 Protease Without the Propeptide (pdb code 7qfy). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Fusarium Oxysporum M36 Protease Without the Propeptide, PDB code: 7qfy:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Fusarium Oxysporum M36 Protease Without the Propeptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Fusarium Oxysporum M36 Protease Without the Propeptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca402 b:7.9 occ:1.00 O A:VAL130 2.3 8.3 1.0 O A:ASN119 2.3 6.5 1.0 O A:HOH555 2.3 10.1 1.0 OD1 A:ASP155 2.4 9.0 1.0 O A:HOH655 2.5 9.8 1.0 OD1 A:ASP133 2.5 7.3 1.0 OD2 A:ASP133 2.5 10.0 1.0 CG A:ASP133 2.9 7.4 1.0 HH12 A:ARG193 3.3 12.6 1.0 HD21 A:ASN124 3.4 11.9 1.0 C A:VAL130 3.5 11.4 1.0 CG A:ASP155 3.5 12.0 1.0 C A:ASN119 3.5 6.2 1.0 HA2 A:GLY131 3.6 12.9 1.0 H A:VAL130 3.7 14.7 1.0 H A:GLN121 3.7 8.6 1.0 H A:GLY156 3.7 11.2 1.0 HA A:PHE120 3.8 8.5 1.0 NH1 A:ARG193 3.9 10.5 1.0 OD2 A:ASP155 4.0 12.9 1.0 HH11 A:ARG193 4.0 12.6 1.0 HA2 A:GLY118 4.1 8.9 1.0 N A:ASN119 4.2 6.7 1.0 ND2 A:ASN124 4.2 9.9 1.0 HA A:ASP155 4.2 9.6 1.0 C A:GLY118 4.2 7.9 1.0 H A:ASN119 4.3 8.0 1.0 HB A:VAL130 4.3 15.0 1.0 OD1 A:ASN119 4.4 8.8 1.0 N A:VAL130 4.4 12.2 1.0 CA A:GLY131 4.4 10.7 1.0 N A:GLY131 4.4 12.7 1.0 N A:GLY156 4.4 9.3 1.0 N A:PHE120 4.4 6.0 1.0 CB A:ASP133 4.4 8.5 1.0 N A:GLN121 4.4 7.2 1.0 O A:GLY118 4.5 6.7 1.0 CA A:ASN119 4.5 6.6 1.0 CA A:PHE120 4.5 7.1 1.0 CA A:VAL130 4.5 11.8 1.0 OD1 A:ASN124 4.6 10.6 1.0 O A:GLN121 4.6 9.1 1.0 HA2 A:GLY156 4.7 11.3 1.0 HB3 A:ASP133 4.7 10.2 1.0 CA A:GLY118 4.7 7.4 1.0 O A:GLY131 4.7 11.7 1.0 CB A:ASP155 4.8 10.8 1.0 HD22 A:ASN124 4.8 11.9 1.0 HB2 A:ASP133 4.8 10.2 1.0 C A:GLY131 4.8 9.6 1.0 CA A:ASP155 4.8 8.0 1.0 CG A:ASN124 4.9 11.2 1.0 HH22 A:ARG193 4.9 10.0 1.0 HB2 A:GLN121 4.9 12.5 1.0 CB A:VAL130 4.9 12.5 1.0 C A:PHE120 5.0 6.7 1.0 H A:ASP133 5.0 11.4 1.0

Calcium binding site 2 out of 2 in the Fusarium Oxysporum M36 Protease Without the Propeptide


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Fusarium Oxysporum M36 Protease Without the Propeptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca403 b:20.5 occ:1.00 O A:ASN192 2.3 9.2 1.0 O A:GLY197 2.3 9.4 1.0 O A:ASN200 2.3 14.4 1.0 O A:THR195 2.4 9.4 1.0 O A:ARG193 2.5 8.1 1.0 O A:HOH627 2.7 16.0 1.0 HA A:ARG193 3.0 9.9 1.0 C A:ARG193 3.1 7.6 1.0 C A:GLY197 3.3 8.6 1.0 C A:ASN200 3.4 17.5 1.0 C A:ASN192 3.4 8.9 1.0 H A:ASN200 3.4 15.2 1.0 C A:THR195 3.4 10.2 1.0 CA A:ARG193 3.4 8.2 1.0 HA A:PRO198 3.5 11.7 1.0 N A:GLY197 3.7 10.0 1.0 HB3 A:ASN200 3.7 27.4 1.0 H A:GLY197 3.8 12.1 1.0 HA A:SER201 3.8 21.5 1.0 N A:ARG193 3.9 7.5 1.0 N A:THR195 3.9 9.2 1.0 H A:THR195 4.0 11.0 1.0 C A:GLY196 4.0 10.8 1.0 N A:ASN200 4.1 12.7 1.0 N A:LEU194 4.1 7.9 1.0 CA A:GLY197 4.1 9.4 1.0 O A:HOH624 4.1 12.7 1.0 C A:LEU194 4.1 8.5 1.0 CA A:PRO198 4.1 9.7 1.0 N A:PRO198 4.1 10.1 1.0 CA A:ASN200 4.1 14.4 1.0 HA3 A:GLY196 4.2 13.2 1.0 CA A:THR195 4.3 10.2 1.0 N A:SER201 4.3 18.3 1.0 N A:GLY196 4.3 9.6 1.0 C A:PRO198 4.4 10.1 1.0 O A:GLY196 4.4 10.9 1.0 CB A:ASN200 4.4 22.8 1.0 CA A:GLY196 4.4 11.0 1.0 HB A:THR195 4.4 11.8 1.0 O A:LEU194 4.5 8.4 1.0 HA2 A:GLY197 4.5 11.3 1.0 CA A:SER201 4.5 17.9 1.0 HA A:ASN192 4.6 12.8 1.0 HD3 A:ARG193 4.6 12.4 1.0 CA A:LEU194 4.6 8.3 1.0 HB2 A:CYS203 4.6 17.0 1.0 CA A:ASN192 4.6 10.7 1.0 H A:LEU194 4.7 9.5 1.0 O A:PRO198 4.7 10.8 1.0 H A:ARG193 4.7 9.0 1.0 HA A:LEU194 4.8 10.0 1.0 HG A:SER201 4.8 22.8 1.0 HB2 A:ASN200 4.8 27.4 1.0 HA3 A:GLY197 4.8 11.3 1.0 CB A:ARG193 4.8 7.1 1.0 N A:ALA199 4.9 10.3 1.0 SG A:CYS203 4.9 20.6 1.0 CB A:THR195 4.9 9.8 1.0 OG A:SER201 4.9 19.0 1.0 HB3 A:ARG193 5.0 8.4 1.0 H A:ALA199 5.0 12.4 1.0

C.Wilkens, J.Qiu, A.S.Meyer, J.P.Morth. Fusarium Oxysporum M36 Protease Without the Propeptide To Be Published.