Calcium in PDB 7u32: Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution

The structure of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution also contains other interesting chemical elements:

Zinc

(Zn)

12 atoms

The binding sites of Calcium atom in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution (pdb code 7u32). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution, PDB code: 7u32:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca302 b:30.0 occ:1.00 OE2 A:GLU154 2.4 136.9 1.0 OD2 A:ASP66 2.4 138.6 1.0 CG A:ASP66 3.3 146.0 1.0 CD A:GLU154 3.4 140.7 1.0 OD1 A:ASP66 3.6 150.6 1.0 C4' Z:DA19 3.7 68.4 1.0 C2' Z:DA19 3.7 60.6 1.0 OE1 A:GLU154 3.7 129.0 1.0 O3' Z:DA19 3.9 61.8 1.0 O4' Z:DA19 4.0 70.0 1.0 C3' Z:DA19 4.1 60.9 1.0 C1' Z:DA19 4.1 65.0 1.0 O A:TYR67 4.3 132.5 1.0 OP1 Z:DA19 4.4 61.8 1.0 CB A:ASP66 4.7 132.1 1.0 CG A:GLU154 4.7 144.0 1.0 OD2 A:ASP118 4.8 157.1 1.0 CE1 A:HIS157 4.8 145.9 1.0 C5' Z:DA19 5.0 61.0 1.0

Calcium binding site 2 out of 2 in the Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Mvv Cleaved Synaptic Complex (Csc) Intasome at 3.4 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ I:Ca302 b:30.0 occ:1.00 OE2 I:GLU154 2.4 136.9 1.0 OD2 I:ASP66 2.4 138.6 1.0 CG I:ASP66 3.4 146.0 1.0 CD I:GLU154 3.4 140.7 1.0 OD1 I:ASP66 3.6 150.6 1.0 OE1 I:GLU154 3.7 129.0 1.0 C4' W:DA19 3.7 68.4 1.0 C2' W:DA19 3.8 60.6 1.0 O3' W:DA19 3.9 61.8 1.0 O4' W:DA19 4.0 70.0 1.0 C3' W:DA19 4.0 60.9 1.0 C1' W:DA19 4.1 65.0 1.0 O I:TYR67 4.2 132.5 1.0 OP1 W:DA19 4.2 61.8 1.0 CE1 I:HIS157 4.7 145.9 1.0 CG I:GLU154 4.7 144.0 1.0 CB I:ASP66 4.7 132.1 1.0 C5' W:DA19 4.9 61.0 1.0 OD2 I:ASP118 5.0 157.1 1.0

A.Ballandras-Colas, V.Chivukula, D.T.Gruszka, Z.Shan, P.K.Singh, V.E.Pye, R.K.Mclean, G.J.Bedwell, W.Li, A.Nans, N.J.Cook, H.J.Fadel, E.M.Poeschla, D.J.Griffiths, J.Vargas, I.A.Taylor, D.Lyumkis, H.Yardimci, A.N.Engelman, P.Cherepanov. Multivalent Interactions Essential For Lentiviral Integrase Function. Nat Commun V. 13 2416 2022.
ISSN: ESSN 2041-1723
PubMed: 35504909
DOI: 10.1038/S41467-022-29928-8