Atomistry » Calcium » PDB 7xvv-7yq7 » 7yo5
Atomistry »
  Calcium »
    PDB 7xvv-7yq7 »
      7yo5 »

Calcium in PDB 7yo5: Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo (pdb code 7yo5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo, PDB code: 7yo5:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 1 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1101

b:103.4
occ:1.00
 OE1 A:GLU535 2.4 84.8 1.0
O A:ARG514 2.5 91.7 1.0
OE2 A:GLU535 2.5 84.8 1.0
O A:SER533 2.7 91.7 1.0
CD A:GLU535 2.8 84.8 1.0
O A:SER600 3.3 88.6 1.0
C A:ARG514 3.6 91.7 1.0
C A:SER533 3.6 91.7 1.0
CA A:SER533 4.0 91.7 1.0
CB A:SER533 4.2 91.7 1.0
CG A:GLU535 4.3 84.8 1.0
OD1 A:ASP601 4.3 99.4 1.0
C A:SER600 4.4 88.6 1.0
CA A:SER515 4.4 95.8 1.0
OG A:SER600 4.4 88.6 1.0
N A:SER515 4.4 95.8 1.0
C A:SER515 4.4 95.8 1.0
N A:ARG514 4.5 91.7 1.0
O A:SER515 4.5 95.8 1.0
CA A:ARG514 4.6 91.7 1.0
N A:ASN534 4.7 88.5 1.0
CA A:SER600 4.8 88.6 1.0
N A:PHE516 5.0 105.1 1.0

Calcium binding site 2 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 2 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1102

b:79.8
occ:1.00
 O A:ASP892 2.5 75.1 1.0
O A:GLN889 2.6 66.8 1.0
ND2 B:ASN449 2.7 69.5 1.0
O A:ASP895 2.8 90.3 1.0
OD1 A:ASP897 2.8 90.6 1.0
OD1 B:ASN449 3.4 69.5 1.0
CG B:ASN449 3.5 69.5 1.0
C A:ASP892 3.6 75.1 1.0
C A:GLN889 3.7 66.8 1.0
CA A:GLN893 3.8 76.6 1.0
O A:GLN893 3.9 76.6 1.0
CG A:ASP897 3.9 90.6 1.0
C A:ASP895 3.9 90.3 1.0
C A:GLN893 4.0 76.6 1.0
N A:GLN893 4.2 76.6 1.0
OD2 A:ASP897 4.3 90.6 1.0
N A:ASP895 4.5 90.3 1.0
CA A:GLN889 4.5 66.8 1.0
CA A:ASP895 4.5 90.3 1.0
CB A:ASP895 4.6 90.3 1.0
NE2 A:GLN893 4.6 76.6 1.0
CB A:GLN889 4.7 66.8 1.0
N A:PHE890 4.7 62.8 1.0
N A:ASP897 4.8 90.6 1.0
CA A:PHE890 4.8 62.8 1.0
CA A:ASP892 4.9 75.1 1.0
N A:ASP894 4.9 84.9 1.0
C A:ASP896 4.9 92.0 1.0
N A:ASP892 4.9 75.1 1.0
N A:ASP896 4.9 92.0 1.0
CD A:GLN893 4.9 76.6 1.0
CB B:ASN449 5.0 69.5 1.0

Calcium binding site 3 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 3 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1101

b:69.0
occ:1.00
 O B:SER533 2.5 86.8 1.0
O B:ARG514 2.5 90.2 1.0
OE2 B:GLU535 3.2 79.5 1.0
O B:SER600 3.4 88.2 1.0
CG B:GLU535 3.4 79.5 1.0
C B:SER533 3.5 86.8 1.0
C B:ARG514 3.7 90.2 1.0
CD B:GLU535 3.8 79.5 1.0
CA B:SER533 4.0 86.8 1.0
CA B:SER515 4.3 104.8 1.0
CB B:SER533 4.3 86.8 1.0
N B:SER515 4.5 104.8 1.0
C B:SER600 4.5 88.2 1.0
C B:SER515 4.6 104.8 1.0
N B:ASN534 4.6 84.9 1.0
N B:ARG514 4.7 90.2 1.0
N B:GLU535 4.7 79.5 1.0
OG B:SER600 4.7 88.2 1.0
CB B:GLU535 4.8 79.5 1.0
CA B:ARG514 4.8 90.2 1.0
N B:PHE516 4.8 109.4 1.0

Calcium binding site 4 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 4 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1102

b:87.0
occ:1.00
 O B:GLN889 2.4 74.4 1.0
OD1 B:ASP895 2.4 83.5 1.0
OD1 B:ASP897 2.4 95.8 1.0
OD1 C:ASN449 2.5 74.2 1.0
OD2 B:ASP895 2.7 83.5 1.0
OD2 B:ASP897 2.8 95.8 1.0
CG B:ASP895 2.8 83.5 1.0
O B:ASP892 2.8 76.0 1.0
ND2 C:ASN449 2.9 74.2 1.0
CG B:ASP897 2.9 95.8 1.0
CG C:ASN449 3.0 74.2 1.0
C B:GLN889 3.5 74.4 1.0
O B:ASP895 3.8 83.5 1.0
C B:ASP892 4.0 76.0 1.0
CB B:ASP895 4.1 83.5 1.0
CA B:GLN889 4.1 74.4 1.0
CB B:ASP897 4.4 95.8 1.0
CB B:GLN889 4.4 74.4 1.0
C B:ASP895 4.5 83.5 1.0
CA B:GLN893 4.5 81.2 1.0
CB C:ASN449 4.5 74.2 1.0
N B:PHE890 4.5 68.8 1.0
O C:ASN449 4.6 74.2 1.0
N B:GLN893 4.7 81.2 1.0
CA B:ASP895 4.7 83.5 1.0
N B:ASP895 4.7 83.5 1.0
CA B:PHE890 4.8 68.8 1.0
C B:GLN893 4.8 81.2 1.0
O B:GLN893 4.8 81.2 1.0
CA B:ASP897 4.8 95.8 1.0
N B:ASP897 5.0 95.8 1.0
N B:ASP892 5.0 76.0 1.0

Calcium binding site 5 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 5 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1101

b:91.0
occ:1.00
 O C:ARG514 2.7 102.9 1.0
N C:PHE516 2.9 113.4 1.0
CB C:PHE516 2.9 113.4 1.0
O C:SER533 3.3 98.0 1.0
CA C:PHE516 3.3 113.4 1.0
CA C:SER533 3.7 98.0 1.0
C C:SER515 3.8 110.1 1.0
C C:ARG514 3.9 102.9 1.0
CB C:SER533 3.9 98.0 1.0
C C:SER533 3.9 98.0 1.0
CA C:SER515 4.1 110.1 1.0
CG C:PHE516 4.3 113.4 1.0
N C:SER515 4.5 110.1 1.0
OE2 C:GLU535 4.7 91.4 1.0
O C:SER600 4.8 91.4 1.0
C C:PHE516 4.8 113.4 1.0
O C:SER515 4.8 110.1 1.0
OG C:SER533 4.9 98.0 1.0
N C:SER533 4.9 98.0 1.0

Calcium binding site 6 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 6 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1102

b:93.8
occ:1.00
 O C:ASP892 2.0 84.9 1.0
O C:ASP895 2.5 96.0 1.0
O C:GLN893 2.6 84.8 1.0
C C:GLN893 2.7 84.8 1.0
CA C:GLN893 2.8 84.8 1.0
C C:ASP892 2.9 84.9 1.0
N C:GLN893 3.2 84.8 1.0
C C:ASP895 3.4 96.0 1.0
N C:ASP895 3.4 96.0 1.0
O C:GLN889 3.5 76.7 1.0
N C:ASP894 3.7 86.1 1.0
CA C:ASP895 3.7 96.0 1.0
CB C:ASP895 3.8 96.0 1.0
OD1 D:ASN449 3.9 72.6 1.0
C C:ASP894 4.1 86.1 1.0
CB C:GLN893 4.2 84.8 1.0
CA C:ASP892 4.3 84.9 1.0
ND2 D:ASN449 4.4 72.6 1.0
OE1 C:GLN893 4.5 84.8 1.0
CA C:ASP894 4.5 86.1 1.0
CG D:ASN449 4.5 72.6 1.0
C C:GLN889 4.7 76.7 1.0
N C:ASP896 4.7 98.2 1.0
CB C:ASP892 4.8 84.9 1.0
N C:ASP892 4.8 84.9 1.0
CD C:GLN893 4.8 84.8 1.0
O C:ASP894 4.9 86.1 1.0

Calcium binding site 7 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 7 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1101

b:85.9
occ:1.00
 O D:ARG514 2.7 92.5 1.0
O D:SER600 3.2 87.0 1.0
CG D:GLU535 3.3 82.3 1.0
OE2 D:GLU535 3.4 82.3 1.0
O D:SER533 3.5 86.9 1.0
C D:ARG514 3.5 92.5 1.0
CD D:GLU535 3.7 82.3 1.0
N D:ARG514 4.0 92.5 1.0
OG D:SER533 4.1 86.9 1.0
N D:SER515 4.2 99.4 1.0
CA D:SER515 4.4 99.4 1.0
C D:SER600 4.4 87.0 1.0
CA D:ARG514 4.4 92.5 1.0
C D:SER533 4.5 86.9 1.0
CB D:ALA367 4.5 101.7 1.0
CB D:GLU535 4.6 82.3 1.0
OH D:TYR537 4.6 87.4 1.0
CA D:SER533 4.7 86.9 1.0
CB D:MET513 4.7 90.2 1.0
C D:MET513 4.8 90.2 1.0
OE1 D:GLU535 4.9 82.3 1.0
CA D:MET513 5.0 90.2 1.0
O D:ALA367 5.0 101.7 1.0

Calcium binding site 8 out of 8 in 7yo5

Go back to Calcium Binding Sites List in 7yo5
Calcium binding site 8 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1102

b:82.3
occ:1.00
 O D:ASP892 2.4 66.3 1.0
OD1 D:ASP897 2.4 81.4 1.0
OD2 D:ASP897 2.5 81.4 1.0
OD1 D:ASP895 2.5 73.9 1.0
O D:GLN889 2.5 64.8 1.0
OD1 A:ASN449 2.7 68.3 1.0
CG D:ASP897 2.8 81.4 1.0
OD2 D:ASP895 2.8 73.9 1.0
CG D:ASP895 3.0 73.9 1.0
ND2 A:ASN449 3.3 68.3 1.0
CG A:ASN449 3.4 68.3 1.0
C D:ASP892 3.5 66.3 1.0
C D:GLN889 3.6 64.8 1.0
CA D:GLN889 4.1 64.8 1.0
CA D:GLN893 4.1 71.3 1.0
CB D:ASP897 4.2 81.4 1.0
N D:GLN893 4.3 71.3 1.0
CB D:ASP895 4.4 73.9 1.0
CB D:GLN889 4.6 64.8 1.0
CA D:ASP892 4.6 66.3 1.0
N D:ASP892 4.6 66.3 1.0
C D:GLN893 4.6 71.3 1.0
O D:ASP895 4.7 73.9 1.0
N D:PHE890 4.7 57.7 1.0
O D:GLN893 4.8 71.3 1.0
C D:ASP895 4.8 73.9 1.0
CB A:ASN449 4.9 68.3 1.0
O A:ASN449 4.9 68.3 1.0
CA D:ASP897 4.9 81.4 1.0
N D:ASP897 5.0 81.4 1.0

Reference:

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.
Page generated: Fri Jul 19 06:19:57 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy