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Calcium in PDB 7yo5: Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo

Calcium Binding Sites:

The binding sites of Calcium atom in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo (pdb code 7yo5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo, PDB code: 7yo5:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 7yo5

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Calcium binding site 1 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1101

b:103.4
occ:1.00
 OE1 A:GLU535 2.4 84.8 1.0
O A:ARG514 2.5 91.7 1.0
OE2 A:GLU535 2.5 84.8 1.0
O A:SER533 2.7 91.7 1.0
CD A:GLU535 2.8 84.8 1.0
O A:SER600 3.3 88.6 1.0
C A:ARG514 3.6 91.7 1.0
C A:SER533 3.6 91.7 1.0
CA A:SER533 4.0 91.7 1.0
CB A:SER533 4.2 91.7 1.0
CG A:GLU535 4.3 84.8 1.0
OD1 A:ASP601 4.3 99.4 1.0
C A:SER600 4.4 88.6 1.0
CA A:SER515 4.4 95.8 1.0
OG A:SER600 4.4 88.6 1.0
N A:SER515 4.4 95.8 1.0
C A:SER515 4.4 95.8 1.0
N A:ARG514 4.5 91.7 1.0
O A:SER515 4.5 95.8 1.0
CA A:ARG514 4.6 91.7 1.0
N A:ASN534 4.7 88.5 1.0
CA A:SER600 4.8 88.6 1.0
N A:PHE516 5.0 105.1 1.0

Calcium binding site 2 out of 8 in 7yo5

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Calcium binding site 2 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1102

b:79.8
occ:1.00
 O A:ASP892 2.5 75.1 1.0
O A:GLN889 2.6 66.8 1.0
ND2 B:ASN449 2.7 69.5 1.0
O A:ASP895 2.8 90.3 1.0
OD1 A:ASP897 2.8 90.6 1.0
OD1 B:ASN449 3.4 69.5 1.0
CG B:ASN449 3.5 69.5 1.0
C A:ASP892 3.6 75.1 1.0
C A:GLN889 3.7 66.8 1.0
CA A:GLN893 3.8 76.6 1.0
O A:GLN893 3.9 76.6 1.0
CG A:ASP897 3.9 90.6 1.0
C A:ASP895 3.9 90.3 1.0
C A:GLN893 4.0 76.6 1.0
N A:GLN893 4.2 76.6 1.0
OD2 A:ASP897 4.3 90.6 1.0
N A:ASP895 4.5 90.3 1.0
CA A:GLN889 4.5 66.8 1.0
CA A:ASP895 4.5 90.3 1.0
CB A:ASP895 4.6 90.3 1.0
NE2 A:GLN893 4.6 76.6 1.0
CB A:GLN889 4.7 66.8 1.0
N A:PHE890 4.7 62.8 1.0
N A:ASP897 4.8 90.6 1.0
CA A:PHE890 4.8 62.8 1.0
CA A:ASP892 4.9 75.1 1.0
N A:ASP894 4.9 84.9 1.0
C A:ASP896 4.9 92.0 1.0
N A:ASP892 4.9 75.1 1.0
N A:ASP896 4.9 92.0 1.0
CD A:GLN893 4.9 76.6 1.0
CB B:ASN449 5.0 69.5 1.0

Calcium binding site 3 out of 8 in 7yo5

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Calcium binding site 3 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1101

b:69.0
occ:1.00
 O B:SER533 2.5 86.8 1.0
O B:ARG514 2.5 90.2 1.0
OE2 B:GLU535 3.2 79.5 1.0
O B:SER600 3.4 88.2 1.0
CG B:GLU535 3.4 79.5 1.0
C B:SER533 3.5 86.8 1.0
C B:ARG514 3.7 90.2 1.0
CD B:GLU535 3.8 79.5 1.0
CA B:SER533 4.0 86.8 1.0
CA B:SER515 4.3 104.8 1.0
CB B:SER533 4.3 86.8 1.0
N B:SER515 4.5 104.8 1.0
C B:SER600 4.5 88.2 1.0
C B:SER515 4.6 104.8 1.0
N B:ASN534 4.6 84.9 1.0
N B:ARG514 4.7 90.2 1.0
N B:GLU535 4.7 79.5 1.0
OG B:SER600 4.7 88.2 1.0
CB B:GLU535 4.8 79.5 1.0
CA B:ARG514 4.8 90.2 1.0
N B:PHE516 4.8 109.4 1.0

Calcium binding site 4 out of 8 in 7yo5

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Calcium binding site 4 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1102

b:87.0
occ:1.00
 O B:GLN889 2.4 74.4 1.0
OD1 B:ASP895 2.4 83.5 1.0
OD1 B:ASP897 2.4 95.8 1.0
OD1 C:ASN449 2.5 74.2 1.0
OD2 B:ASP895 2.7 83.5 1.0
OD2 B:ASP897 2.8 95.8 1.0
CG B:ASP895 2.8 83.5 1.0
O B:ASP892 2.8 76.0 1.0
ND2 C:ASN449 2.9 74.2 1.0
CG B:ASP897 2.9 95.8 1.0
CG C:ASN449 3.0 74.2 1.0
C B:GLN889 3.5 74.4 1.0
O B:ASP895 3.8 83.5 1.0
C B:ASP892 4.0 76.0 1.0
CB B:ASP895 4.1 83.5 1.0
CA B:GLN889 4.1 74.4 1.0
CB B:ASP897 4.4 95.8 1.0
CB B:GLN889 4.4 74.4 1.0
C B:ASP895 4.5 83.5 1.0
CA B:GLN893 4.5 81.2 1.0
CB C:ASN449 4.5 74.2 1.0
N B:PHE890 4.5 68.8 1.0
O C:ASN449 4.6 74.2 1.0
N B:GLN893 4.7 81.2 1.0
CA B:ASP895 4.7 83.5 1.0
N B:ASP895 4.7 83.5 1.0
CA B:PHE890 4.8 68.8 1.0
C B:GLN893 4.8 81.2 1.0
O B:GLN893 4.8 81.2 1.0
CA B:ASP897 4.8 95.8 1.0
N B:ASP897 5.0 95.8 1.0
N B:ASP892 5.0 76.0 1.0

Calcium binding site 5 out of 8 in 7yo5

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Calcium binding site 5 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1101

b:91.0
occ:1.00
 O C:ARG514 2.7 102.9 1.0
N C:PHE516 2.9 113.4 1.0
CB C:PHE516 2.9 113.4 1.0
O C:SER533 3.3 98.0 1.0
CA C:PHE516 3.3 113.4 1.0
CA C:SER533 3.7 98.0 1.0
C C:SER515 3.8 110.1 1.0
C C:ARG514 3.9 102.9 1.0
CB C:SER533 3.9 98.0 1.0
C C:SER533 3.9 98.0 1.0
CA C:SER515 4.1 110.1 1.0
CG C:PHE516 4.3 113.4 1.0
N C:SER515 4.5 110.1 1.0
OE2 C:GLU535 4.7 91.4 1.0
O C:SER600 4.8 91.4 1.0
C C:PHE516 4.8 113.4 1.0
O C:SER515 4.8 110.1 1.0
OG C:SER533 4.9 98.0 1.0
N C:SER533 4.9 98.0 1.0

Calcium binding site 6 out of 8 in 7yo5

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Calcium binding site 6 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1102

b:93.8
occ:1.00
 O C:ASP892 2.0 84.9 1.0
O C:ASP895 2.5 96.0 1.0
O C:GLN893 2.6 84.8 1.0
C C:GLN893 2.7 84.8 1.0
CA C:GLN893 2.8 84.8 1.0
C C:ASP892 2.9 84.9 1.0
N C:GLN893 3.2 84.8 1.0
C C:ASP895 3.4 96.0 1.0
N C:ASP895 3.4 96.0 1.0
O C:GLN889 3.5 76.7 1.0
N C:ASP894 3.7 86.1 1.0
CA C:ASP895 3.7 96.0 1.0
CB C:ASP895 3.8 96.0 1.0
OD1 D:ASN449 3.9 72.6 1.0
C C:ASP894 4.1 86.1 1.0
CB C:GLN893 4.2 84.8 1.0
CA C:ASP892 4.3 84.9 1.0
ND2 D:ASN449 4.4 72.6 1.0
OE1 C:GLN893 4.5 84.8 1.0
CA C:ASP894 4.5 86.1 1.0
CG D:ASN449 4.5 72.6 1.0
C C:GLN889 4.7 76.7 1.0
N C:ASP896 4.7 98.2 1.0
CB C:ASP892 4.8 84.9 1.0
N C:ASP892 4.8 84.9 1.0
CD C:GLN893 4.8 84.8 1.0
O C:ASP894 4.9 86.1 1.0

Calcium binding site 7 out of 8 in 7yo5

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Calcium binding site 7 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1101

b:85.9
occ:1.00
 O D:ARG514 2.7 92.5 1.0
O D:SER600 3.2 87.0 1.0
CG D:GLU535 3.3 82.3 1.0
OE2 D:GLU535 3.4 82.3 1.0
O D:SER533 3.5 86.9 1.0
C D:ARG514 3.5 92.5 1.0
CD D:GLU535 3.7 82.3 1.0
N D:ARG514 4.0 92.5 1.0
OG D:SER533 4.1 86.9 1.0
N D:SER515 4.2 99.4 1.0
CA D:SER515 4.4 99.4 1.0
C D:SER600 4.4 87.0 1.0
CA D:ARG514 4.4 92.5 1.0
C D:SER533 4.5 86.9 1.0
CB D:ALA367 4.5 101.7 1.0
CB D:GLU535 4.6 82.3 1.0
OH D:TYR537 4.6 87.4 1.0
CA D:SER533 4.7 86.9 1.0
CB D:MET513 4.7 90.2 1.0
C D:MET513 4.8 90.2 1.0
OE1 D:GLU535 4.9 82.3 1.0
CA D:MET513 5.0 90.2 1.0
O D:ALA367 5.0 101.7 1.0

Calcium binding site 8 out of 8 in 7yo5

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Calcium binding site 8 out of 8 in the Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Cryo-Em Structure of RCK1 Mutated Human SLO1 Apo within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca1102

b:82.3
occ:1.00
 O D:ASP892 2.4 66.3 1.0
OD1 D:ASP897 2.4 81.4 1.0
OD2 D:ASP897 2.5 81.4 1.0
OD1 D:ASP895 2.5 73.9 1.0
O D:GLN889 2.5 64.8 1.0
OD1 A:ASN449 2.7 68.3 1.0
CG D:ASP897 2.8 81.4 1.0
OD2 D:ASP895 2.8 73.9 1.0
CG D:ASP895 3.0 73.9 1.0
ND2 A:ASN449 3.3 68.3 1.0
CG A:ASN449 3.4 68.3 1.0
C D:ASP892 3.5 66.3 1.0
C D:GLN889 3.6 64.8 1.0
CA D:GLN889 4.1 64.8 1.0
CA D:GLN893 4.1 71.3 1.0
CB D:ASP897 4.2 81.4 1.0
N D:GLN893 4.3 71.3 1.0
CB D:ASP895 4.4 73.9 1.0
CB D:GLN889 4.6 64.8 1.0
CA D:ASP892 4.6 66.3 1.0
N D:ASP892 4.6 66.3 1.0
C D:GLN893 4.6 71.3 1.0
O D:ASP895 4.7 73.9 1.0
N D:PHE890 4.7 57.7 1.0
O D:GLN893 4.8 71.3 1.0
C D:ASP895 4.8 73.9 1.0
CB A:ASN449 4.9 68.3 1.0
O A:ASN449 4.9 68.3 1.0
CA D:ASP897 4.9 81.4 1.0
N D:ASP897 5.0 81.4 1.0

Reference:

D.Yamanouchi, D.Yamanouchi, O.Nureki. N/A N/A.
Page generated: Fri Jul 19 06:19:57 2024

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