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Calcium in PDB 3pvh: Structural and Functional Analysis of Arabidopsis Thaliana Thylakoid Lumen Protein ATTLP18.3

Protein crystallography data

The structure of Structural and Functional Analysis of Arabidopsis Thaliana Thylakoid Lumen Protein ATTLP18.3, PDB code: 3pvh was solved by H.Y.Wu, M.S.Liu, T.P.Lin, Y.S.Cheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.44 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 46.871, 49.890, 76.511, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23

Calcium Binding Sites:

The binding sites of Calcium atom in the Structural and Functional Analysis of Arabidopsis Thaliana Thylakoid Lumen Protein ATTLP18.3 (pdb code 3pvh). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Structural and Functional Analysis of Arabidopsis Thaliana Thylakoid Lumen Protein ATTLP18.3, PDB code: 3pvh:

Calcium binding site 1 out of 1 in 3pvh

Go back to Calcium Binding Sites List in 3pvh
Calcium binding site 1 out of 1 in the Structural and Functional Analysis of Arabidopsis Thaliana Thylakoid Lumen Protein ATTLP18.3


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structural and Functional Analysis of Arabidopsis Thaliana Thylakoid Lumen Protein ATTLP18.3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca300

b:53.3
occ:1.00
OD2 A:ASP103 2.6 30.6 1.0
N A:ARG136 2.9 25.4 1.0
O A:HOH34 2.9 43.6 1.0
OG A:SER85 3.3 35.9 1.0
O A:ASP103 3.5 28.3 1.0
CB A:ARG136 3.6 28.9 1.0
C A:ASP103 3.7 26.5 1.0
CA A:ALA104 3.7 26.6 1.0
CG A:ASP103 3.7 29.5 1.0
CA A:VAL135 3.7 22.7 1.0
C A:VAL135 3.8 23.1 1.0
N A:ALA104 3.8 26.2 1.0
CA A:ARG136 3.8 27.9 1.0
CG2 A:VAL135 3.9 26.2 1.0
CB A:SER85 4.0 33.7 1.0
CB A:ASP103 4.2 26.1 1.0
CB A:ALA104 4.2 25.9 1.0
O A:HOH314 4.2 63.4 1.0
CB A:VAL135 4.4 23.9 1.0
CA A:ASP103 4.6 25.3 1.0
O A:HOH284 4.7 62.9 1.0
OD1 A:ASP103 4.7 31.9 1.0
N A:LYS137 4.8 32.2 1.0
C A:ARG136 4.9 29.0 1.0
N A:VAL135 4.9 20.5 1.0
O A:THR134 4.9 21.0 1.0
O A:VAL135 4.9 23.2 1.0
C A:ALA104 5.0 28.4 1.0

Reference:

H.Y.Wu, M.S.Liu, T.P.Lin, Y.S.Cheng. Structural and Functional Assays of ATTLP18.3 Identify Its Novel Acid Phosphatase Activity in Thylakoid Lumen Plant Physiol. V. 157 1015 2011.
ISSN: ISSN 0032-0889
PubMed: 21908686
DOI: 10.1104/PP.111.184739
Page generated: Tue Jul 8 15:35:01 2025

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