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Calcium in PDB 3pz0: The Crystal Structure of Aaleurs-CP1

Enzymatic activity of The Crystal Structure of Aaleurs-CP1

All present enzymatic activity of The Crystal Structure of Aaleurs-CP1:
6.1.1.4;

Protein crystallography data

The structure of The Crystal Structure of Aaleurs-CP1, PDB code: 3pz0 was solved by R.J.Liu, E.D.Wang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.51 / 2.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 38.958, 94.565, 118.309, 90.00, 90.33, 90.00
R / Rfree (%) 21.7 / 27.4

Calcium Binding Sites:

The binding sites of Calcium atom in the The Crystal Structure of Aaleurs-CP1 (pdb code 3pz0). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the The Crystal Structure of Aaleurs-CP1, PDB code: 3pz0:

Calcium binding site 1 out of 1 in 3pz0

Go back to Calcium Binding Sites List in 3pz0
Calcium binding site 1 out of 1 in the The Crystal Structure of Aaleurs-CP1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Crystal Structure of Aaleurs-CP1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1

b:71.3
occ:1.00
O B:HOH47 2.5 33.4 1.0
OE1 B:GLU329 2.7 54.8 1.0
OE1 B:GLU325 2.7 60.6 1.0
CD B:GLU329 3.8 52.3 1.0
CD B:GLU325 3.8 58.1 1.0
CB B:ASP327 4.0 47.9 1.0
O B:ASP327 4.1 42.7 1.0
CB B:GLU329 4.1 35.4 1.0
OE2 B:GLU325 4.2 57.4 1.0
CG B:GLU329 4.5 41.9 1.0
C B:ASP327 4.7 43.9 1.0
OE2 B:GLU329 4.8 57.9 1.0
OD2 B:ASP327 4.9 56.6 1.0
O B:LYS328 4.9 40.8 1.0
CG B:ASP327 5.0 53.4 1.0
CA B:ASP327 5.0 46.9 1.0

Reference:

R.J.Liu, M.Tan, D.H.Du, B.S.Xu, G.Eriani, E.D.Wang. Peripheral Insertion Modulates the Editing Activity of the Isolated CP1 Domain of Leucyl-Trna Synthetase Biochem.J. V. 440 217 2011.
ISSN: ISSN 0264-6021
PubMed: 21819379
DOI: 10.1042/BJ20111177
Page generated: Tue Jul 8 15:38:15 2025

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