Calcium in PDB 3q0k: Crystal Structure of Human Pacsin 2 F-Bar

The structure of Crystal Structure of Human Pacsin 2 F-Bar, PDB code: 3q0k was solved by X.Bai, G.Meng, X.Zheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.63 / 2.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	31.562, 353.588, 86.045, 90.00, 90.02, 90.00
R / Rfree (%)	20.1 / 29.2

The binding sites of Calcium atom in the Crystal Structure of Human Pacsin 2 F-Bar (pdb code 3q0k). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Human Pacsin 2 F-Bar, PDB code: 3q0k:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of Human Pacsin 2 F-Bar


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Pacsin 2 F-Bar within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca488 b:35.2 occ:1.00 O A:GLY74 2.5 32.7 1.0 OE1 A:GLU81 2.6 28.8 1.0 O A:GLN76 2.7 30.9 1.0 O A:VAL71 2.9 34.2 1.0 O A:GLU72 3.2 35.8 1.0 CE2 A:TYR77 3.3 32.9 1.0 CZ A:TYR77 3.5 33.3 1.0 CD A:GLU81 3.5 29.4 1.0 CD2 A:TYR77 3.5 31.0 1.0 C A:GLY74 3.6 32.8 1.0 C A:GLU72 3.6 35.7 1.0 C A:GLN76 3.7 31.2 1.0 CA A:GLU72 3.8 35.9 1.0 CE1 A:TYR77 3.9 32.1 1.0 CG A:TYR77 3.9 30.2 1.0 OH A:TYR77 4.0 34.7 1.0 C A:VAL71 4.0 34.1 1.0 N A:GLY74 4.0 34.6 1.0 CD1 A:TYR77 4.1 30.6 1.0 OE2 A:GLU81 4.1 29.8 1.0 N A:GLN76 4.1 32.0 1.0 CA A:GLY74 4.3 33.5 1.0 CG A:GLU81 4.4 27.2 1.0 N A:GLU72 4.4 35.2 1.0 N A:LYS73 4.4 35.7 1.0 N A:TYR77 4.5 30.5 1.0 N A:PRO75 4.5 32.2 1.0 CA A:TYR77 4.6 30.0 1.0 CA A:GLN76 4.6 31.4 1.0 C A:LYS73 4.6 34.9 1.0 C A:PRO75 4.7 32.0 1.0 CB A:TYR77 4.9 29.4 1.0 CA A:PRO75 4.9 31.8 1.0 CA A:LYS73 4.9 35.7 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of Human Pacsin 2 F-Bar


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Pacsin 2 F-Bar within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca488 b:42.6 occ:1.00 O B:VAL71 2.5 37.6 1.0 O B:GLU72 2.6 39.8 1.0 O B:GLN76 2.7 39.4 1.0 O B:GLY74 2.7 36.9 1.0 OE1 B:GLU81 3.2 34.9 1.0 C B:GLU72 3.4 39.8 1.0 CE2 B:TYR77 3.5 47.6 1.0 O B:HOH1 3.6 26.6 1.0 CD B:GLU81 3.6 34.7 1.0 CZ B:TYR77 3.6 47.6 1.0 C B:VAL71 3.6 37.6 1.0 CA B:GLU72 3.7 39.9 1.0 C B:GLY74 3.8 37.3 1.0 C B:GLN76 3.8 39.3 1.0 CD2 B:TYR77 3.8 45.6 1.0 O B:HOH519 3.8 36.7 1.0 OE2 B:GLU81 4.0 36.4 1.0 CE1 B:TYR77 4.0 46.5 1.0 N B:GLN76 4.0 38.6 1.0 OH B:TYR77 4.0 49.0 1.0 N B:GLU72 4.1 38.8 1.0 CG B:TYR77 4.2 43.4 1.0 CD1 B:TYR77 4.3 45.3 1.0 N B:GLY74 4.3 38.5 1.0 CG B:GLU81 4.4 32.9 1.0 N B:LYS73 4.5 39.6 1.0 CA B:GLN76 4.5 38.5 1.0 CA B:GLY74 4.5 37.6 1.0 C B:LYS73 4.6 39.5 1.0 C B:PRO75 4.7 38.1 1.0 N B:PRO75 4.7 37.4 1.0 N B:TYR77 4.8 39.8 1.0 CA B:PRO75 4.8 37.3 1.0 CA B:TYR77 4.8 40.2 1.0 CG1 B:VAL71 4.9 34.3 1.0 CA B:VAL71 4.9 36.5 1.0 CA B:LYS73 5.0 40.1 1.0 O B:LYS73 5.0 39.6 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of Human Pacsin 2 F-Bar


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human Pacsin 2 F-Bar within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca488 b:33.8 occ:1.00 O C:GLN76 2.6 26.8 1.0 O C:VAL71 2.8 28.3 1.0 OE1 C:GLU81 2.8 29.0 1.0 O C:GLY74 2.8 26.6 1.0 O C:GLU72 2.9 30.2 1.0 CE2 C:TYR77 3.3 27.3 1.0 C C:GLU72 3.4 30.1 1.0 CD2 C:TYR77 3.6 27.0 1.0 CA C:GLU72 3.6 30.1 1.0 CD C:GLU81 3.7 29.4 1.0 C C:GLN76 3.7 27.0 1.0 C C:VAL71 3.7 28.9 1.0 CZ C:TYR77 3.8 27.2 1.0 C C:GLY74 3.9 26.7 1.0 O C:HOH514 3.9 32.7 1.0 N C:GLN76 4.0 27.3 1.0 N C:GLU72 4.1 29.7 1.0 OH C:TYR77 4.1 27.8 1.0 N C:GLY74 4.2 28.4 1.0 CG C:GLU81 4.3 28.2 1.0 N C:LYS73 4.4 29.6 1.0 CG C:TYR77 4.4 26.8 1.0 OE2 C:GLU81 4.5 32.9 1.0 CA C:GLN76 4.5 27.3 1.0 CE1 C:TYR77 4.5 27.3 1.0 CA C:GLY74 4.6 27.0 1.0 C C:LYS73 4.7 29.1 1.0 N C:TYR77 4.7 26.8 1.0 CD1 C:TYR77 4.7 27.0 1.0 N C:PRO75 4.8 26.5 1.0 C C:PRO75 4.8 26.8 1.0 CA C:LYS73 4.9 29.7 1.0 CA C:TYR77 4.9 27.0 1.0 CG1 C:VAL71 5.0 28.6 1.0 CB C:GLU72 5.0 30.1 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of Human Pacsin 2 F-Bar


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human Pacsin 2 F-Bar within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca488 b:43.8 occ:1.00 O D:GLY74 2.4 36.2 1.0 O D:GLN76 2.5 38.3 1.0 O D:VAL71 2.7 36.3 1.0 O D:GLU72 2.9 37.0 1.0 OE1 D:GLU81 3.2 34.1 1.0 C D:GLU72 3.3 37.4 1.0 CE2 D:TYR77 3.3 45.2 1.0 CA D:GLU72 3.4 37.6 1.0 C D:GLY74 3.5 36.3 1.0 CZ D:TYR77 3.6 45.5 1.0 C D:VAL71 3.6 35.6 1.0 C D:GLN76 3.7 38.2 1.0 CD2 D:TYR77 3.7 44.0 1.0 CD D:GLU81 3.7 35.4 1.0 N D:GLU72 3.9 36.7 1.0 OH D:TYR77 4.0 45.8 1.0 N D:GLN76 4.1 36.6 1.0 CE1 D:TYR77 4.1 45.3 1.0 CG D:GLU81 4.1 33.3 1.0 O D:HOH496 4.1 54.9 1.0 N D:GLY74 4.1 36.7 1.0 CG D:TYR77 4.2 43.0 1.0 CA D:GLY74 4.3 36.4 1.0 O D:HOH498 4.3 31.0 1.0 N D:LYS73 4.3 37.3 1.0 CD1 D:TYR77 4.4 44.8 1.0 CA D:GLN76 4.4 37.5 1.0 OE2 D:GLU81 4.4 36.5 1.0 N D:PRO75 4.5 36.2 1.0 C D:LYS73 4.6 37.4 1.0 C D:PRO75 4.6 36.0 1.0 N D:TYR77 4.6 39.1 1.0 CB D:GLU72 4.8 38.4 1.0 CA D:TYR77 4.8 40.2 1.0 CA D:PRO75 4.9 35.7 1.0 CA D:VAL71 4.9 34.1 1.0 CG1 D:VAL71 5.0 33.1 1.0 CB D:GLN76 5.0 37.2 1.0

X.Bai, G.Meng, X.Zheng. Crystal Structure of Human Pacsin 2 F-Bar Domain To Be Published.