Calcium in PDB 3w6o: Crystal Structure of Human DLP1 in Complex with Gmp-Pcp

All present enzymatic activity of Crystal Structure of Human DLP1 in Complex with Gmp-Pcp:
3.6.5.5;

The structure of Crystal Structure of Human DLP1 in Complex with Gmp-Pcp, PDB code: 3w6o was solved by H.Kishida, S.Sugio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	51.240, 109.070, 128.300, 90.00, 90.00, 90.00
R / Rfree (%)	18.3 / 22.5

The structure of Crystal Structure of Human DLP1 in Complex with Gmp-Pcp also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

The binding sites of Calcium atom in the Crystal Structure of Human DLP1 in Complex with Gmp-Pcp (pdb code 3w6o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Human DLP1 in Complex with Gmp-Pcp, PDB code: 3w6o:

Calcium binding site 1 out of 1 in the Crystal Structure of Human DLP1 in Complex with Gmp-Pcp


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human DLP1 in Complex with Gmp-Pcp within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca805 b:20.1 occ:1.00 O B:HOH1120 2.4 21.1 1.0 O B:HOH1178 2.4 26.6 1.0 O B:HOH1122 2.4 27.4 1.0 O B:HOH977 2.4 25.0 1.0 O B:HOH985 2.6 25.3 1.0 O B:HOH1121 2.6 17.4 1.0 O B:HOH1179 2.7 36.4 1.0 O B:HOH1135 4.1 29.6 1.0 OE2 B:GLU729 4.5 18.8 1.0 O B:HOH1166 4.6 29.6 1.0 OE1 B:GLU729 4.7 18.4 1.0 CG1 B:ILE726 4.9 16.8 1.0

H.Kishida, S.Sugio. Crystal Structure of Gtpase Domain Fused with Minimal Stalks From Human Dynamin-1-Like Protein (DLP1) in Complex with Several Nucleotide Analogues Curr Top Pept Protein Res. V. 14 67 2013.
ISSN: ISSN 0972-4524