Calcium »
PDB 4ry0-4twe »
4tnh »
Calcium in PDB 4tnh: Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Enzymatic activity of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
All present enzymatic activity of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution:
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution, PDB code: 4tnh
was solved by
J.Kern,
R.Tran,
R.Alonso-Mori,
S.Koroidov,
N.Echols,
J.Hattne,
M.Ibrahim,
S.Gul,
H.Laksmono,
R.G.Sierra,
R.J.Gildea,
G.Han,
J.Hellmich,
B.Lassalle-Kaiser,
R.Chatterjee,
A.Brewster,
C.A.Stan,
C.Gloeckner,
A.Lampe,
D.Difiore,
D.Milathianaki,
A.R.Fry,
M.M.Seibert,
J.E.Koglin,
E.Gallo,
J.Uhlig,
D.Sokaras,
T.-C.Weng,
P.H.Zwart,
D.E.Skinner,
M.J.Bogan,
M.Messerschmidt,
P.Glatzel,
G.J.Williams,
S.Boutet,
P.D.Adams,
A.Zouni,
J.Messinger,
N.K.Sauter,
U.Bergmann,
J.Yano,
V.K.Yachandra,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 72.93 / 4.90 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 132.885, 229.033, 307.715, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 28.1 / 29.2 |
Other elements in 4tnh:
The structure of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution also contains other interesting chemical elements:
| Magnesium | (Mg) | 70 atoms |
| Manganese | (Mn) | 8 atoms |
| Iron | (Fe) | 6 atoms |
| Chlorine | (Cl) | 2 atoms |
Calcium Binding Sites:
The binding sites of Calcium atom in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
(pdb code 4tnh). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 6 binding sites of Calcium where determined in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution, PDB code: 4tnh:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Calcium where determined in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution, PDB code: 4tnh:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6;
Calcium binding site 1 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 1 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 2 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 2 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 3 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 3 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 4 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 4 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 5 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 5 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Calcium binding site 6 out of 6 in 4tnh
Go back to
Calcium Binding Sites List in 4tnh
Calcium binding site 6 out
of 6 in the Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Rt Xfel Structure of Photosystem II in the Dark State at 4.9 A Resolution within 5.0Å range:
|
Reference:
J.Kern,
R.Tran,
R.Alonso-Mori,
S.Koroidov,
N.Echols,
J.Hattne,
M.Ibrahim,
S.Gul,
H.Laksmono,
R.G.Sierra,
R.J.Gildea,
G.Han,
J.Hellmich,
B.Lassalle-Kaiser,
R.Chatterjee,
A.S.Brewster,
C.A.Stan,
C.Glockner,
A.Lampe,
D.Difiore,
D.Milathianaki,
A.R.Fry,
M.M.Seibert,
J.E.Koglin,
E.Gallo,
J.Uhlig,
D.Sokaras,
T.C.Weng,
P.H.Zwart,
D.E.Skinner,
M.J.Bogan,
M.Messerschmidt,
P.Glatzel,
G.J.Williams,
S.Boutet,
P.D.Adams,
A.Zouni,
J.Messinger,
N.K.Sauter,
U.Bergmann,
J.Yano,
V.K.Yachandra.
Taking Snapshots of Photosynthetic Water Oxidation Using Femtosecond X-Ray Diffraction and Spectroscopy. Nat Commun V. 5 4371 2014.
ISSN: ESSN 2041-1723
PubMed: 25006873
DOI: 10.1038/NCOMMS5371
Page generated: Wed Jul 9 02:06:06 2025
ISSN: ESSN 2041-1723
PubMed: 25006873
DOI: 10.1038/NCOMMS5371
Last articles
Fe in 2YXOFe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
