Atomistry » Calcium » PDB 6sv0-6t8e » 6svu
Atomistry »
  Calcium »
    PDB 6sv0-6t8e »
      6svu »

Calcium in PDB 6svu: Reference Structure of Bovine Trypsin (Even Frames of Crystal X30)

Enzymatic activity of Reference Structure of Bovine Trypsin (Even Frames of Crystal X30)

All present enzymatic activity of Reference Structure of Bovine Trypsin (Even Frames of Crystal X30):
3.4.21.4;

Protein crystallography data

The structure of Reference Structure of Bovine Trypsin (Even Frames of Crystal X30), PDB code: 6svu was solved by V.Ahlberg Gagner, I.Lundholm, M.J.Garcia-Bonete, H.Rodilla, R.Friedman, V.Zhaunerchyk, G.Bourenkov, T.Schneider, J.Stake, G.Katona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.83 / 1.15
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.480, 56.760, 65.130, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 20.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Reference Structure of Bovine Trypsin (Even Frames of Crystal X30) (pdb code 6svu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Reference Structure of Bovine Trypsin (Even Frames of Crystal X30), PDB code: 6svu:

Calcium binding site 1 out of 1 in 6svu

Go back to Calcium Binding Sites List in 6svu
Calcium binding site 1 out of 1 in the Reference Structure of Bovine Trypsin (Even Frames of Crystal X30)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Reference Structure of Bovine Trypsin (Even Frames of Crystal X30) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca301

b:9.3
occ:1.00
OE1 A:GLU70 2.3 9.3 1.0
O A:ASN72 2.3 9.6 1.0
O A:VAL75 2.3 10.0 1.0
OE2 A:GLU80 2.3 10.3 1.0
O A:HOH418 2.4 9.9 1.0
CD A:GLU70 3.4 8.7 1.0
CD A:GLU80 3.4 9.3 1.0
C A:VAL75 3.4 9.5 1.0
C A:ASN72 3.5 8.6 1.0
OE2 A:GLU70 3.7 9.5 1.0
CG A:GLU80 3.8 10.7 1.0
CA A:VAL76 4.1 10.5 1.0
N A:VAL76 4.1 9.7 1.0
N A:GLU77 4.2 10.2 1.0
N A:VAL75 4.2 9.3 1.0
OE1 A:GLU77 4.2 11.3 1.0
CA A:ILE73 4.3 10.3 1.0
N A:ILE73 4.3 9.6 1.0
N A:ASN72 4.3 9.5 1.0
CA A:ASN72 4.4 9.7 1.0
CA A:VAL75 4.5 10.3 1.0
CG A:GLU77 4.5 10.7 1.0
C A:ILE73 4.5 8.7 1.0
OE1 A:GLU80 4.5 10.7 1.0
N A:ASP71 4.5 8.7 1.0
O A:HOH504 4.5 10.3 1.0
CG A:GLU70 4.6 9.1 1.0
C A:VAL76 4.6 11.3 1.0
CA A:GLU70 4.7 9.3 1.0
CD A:GLU77 4.7 11.9 1.0
CB A:GLU77 4.8 12.1 1.0
CB A:GLU70 4.8 9.1 1.0
CB A:ASN72 4.8 11.0 1.0
O A:ILE73 4.9 10.2 1.0
N A:ASN74 4.9 9.1 1.0
C A:ASP71 5.0 9.3 1.0

Reference:

V.Ahlberg Gagner, I.Lundholm, M.J.Garcia-Bonete, H.Rodilla, R.Friedman, V.Zhaunerchyk, G.Bourenkov, T.Schneider, J.Stake, G.Katona. Clustering of Atomic Displacement Parameters in Bovine Trypsin Reveals A Distributed Lattice of Atoms with Shared Chemical Properties Sci Rep 2020.
ISSN: ESSN 2045-2322
Page generated: Wed Jul 9 17:59:23 2025

Last articles

Mg in 4W5O
Mg in 4W5J
Mg in 4W5N
Mg in 4V2I
Mg in 4V3R
Mg in 4V26
Mg in 4V2G
Mg in 4V1T
Mg in 4V25
Mg in 4V1V
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy