Calcium in PDB 8dmk: Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies

The binding sites of Calcium atom in the Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies (pdb code 8dmk). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies, PDB code: 8dmk:

Calcium binding site 1 out of 1 in the Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca403 b:60.0 occ:1.00 OD1 G:ASP108 2.3 85.5 1.0 O G:THR116 2.3 90.9 1.0 OD2 G:ASP108 2.4 85.5 1.0 O G:PHE105 2.4 93.8 1.0 OG1 G:THR116 2.4 90.9 1.0 O G:SER278 2.5 93.2 1.0 CG G:ASP108 2.6 85.5 1.0 C G:THR116 3.3 90.9 1.0 O G:LEU106 3.3 94.8 1.0 CB G:THR116 3.6 90.9 1.0 C G:PHE105 3.6 93.8 1.0 C G:SER278 3.6 93.2 1.0 C G:LEU106 3.8 94.8 1.0 CA G:THR116 3.8 90.9 1.0 N G:THR116 3.9 90.9 1.0 CB G:ASP108 4.0 85.5 1.0 CA G:LEU106 4.3 94.8 1.0 N G:ASP108 4.4 85.5 1.0 N G:LEU106 4.4 94.8 1.0 N G:THR107 4.4 91.2 1.0 N G:TRP117 4.5 95.2 1.0 CA G:SER278 4.5 93.2 1.0 CA G:PHE105 4.6 93.8 1.0 N G:ASP279 4.6 92.5 1.0 C G:THR107 4.6 91.2 1.0 CA G:ASP279 4.6 92.5 1.0 CA G:ASP108 4.7 85.5 1.0 CG2 G:THR116 4.8 90.9 1.0 CA G:THR107 4.8 91.2 1.0 CB G:SER278 4.8 93.2 1.0 CA G:ASN110 4.9 74.5 1.0 CA G:TRP117 4.9 95.2 1.0 N G:ASN110 4.9 74.5 1.0 OG1 G:THR115 5.0 82.4 1.0

A.W.Kulczyk, K.K.Mckee, X.Zhang, I.Bizukojc, Y.Q.Yu, P.D.Yurchenco. Cryo-Em Reveals the Molecular Basis Oflaminin Polymerization and Ln-Lamininopathies. Nat Commun V. 14 317 2023.
ISSN: ESSN 2041-1723
PubMed: 36658135
DOI: 10.1038/S41467-023-36077-Z