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Calcium in PDB, part 347 (files: 13841-13880), PDB 8deo-8e4m

Experimental structures of coordination spheres of Calcium (Ca) in bioorganic molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius around Calcium atoms. PDB files: 13841-13880 (PDB 8deo-8e4m).
  1. 8deo (Ca: 2) - Structure of Aap A Domain and B-Repeats (Residues 351-813) From Staphylococcus Epidermidis
    Other atoms: Cl (2);
  2. 8df2 (Ca: 4) - The Structure of the 'Alt' Construct of the AMUC_1438 Glycopeptidase
    Other atoms: Na (12); Zn (4);
  3. 8dfr (Ca: 1) - Refined Crystal Structures of Chicken Liver Dihydrofolate Reductase. 3 Angstroms Apo-Enzyme and 1.7 Angstroms Nadph Holo-Enzyme Complex
  4. 8dfv (Ca: 10) - Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iia
  5. 8dge (Ca: 4) - BOGH13ASUS From Bacteroides Ovatus
    Other atoms: Mn (4);
  6. 8dh6 (Ca: 1) - Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs
    Other atoms: Fe (2); Zn (1); Cu (2); Mg (1);
  7. 8dhl (Ca: 4) - Tannerella Forsythia Beta-Glucuronidase (L2)
    Other atoms: Na (2);
  8. 8diq (Ca: 2) - Tubulin-RB3_SLD-Ttl in Complex with SB226
    Other atoms: Mg (5);
  9. 8dj2 (Ca: 3) - Intramolecular Ester Bond-Containing Repeat Domain From Chlamydia Trachomatis Adhesin
  10. 8djf (Ca: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Tetrahedral Intermediate
    Other atoms: Na (1);
  11. 8djz (Ca: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Product
    Other atoms: Na (1);
  12. 8dk0 (Ca: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound (S)Gamma- Valerolactone
    Other atoms: Na (1);
  13. 8dl1 (Ca: 4) - BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose
    Other atoms: Mn (4); Cl (1); Na (1);
  14. 8dl2 (Ca: 4) - BOGH13ASUS From Bacteroides Ovatus Bound to Acarbose
    Other atoms: Mn (4); Cl (1);
  15. 8dl6 (Ca: 1) - Cryo-Em Structure of Human Ferroportin/SLC40 Bound to CA2+ in Nanodisc
  16. 8dmk (Ca: 1) - Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies
  17. 8dml (Ca: 4) - Vibrio Parahaemolyticus Vtra/Vtrc Complex Bound to the Bile Salt Chenodeoxycholate
  18. 8dos (Ca: 2) - Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae
    Other atoms: Mg (1);
  19. 8dq6 (Ca: 6) - Structure of A. Thaliana Mif/D-Dt-Like Protein-1 (MDL1)
  20. 8dqo (Ca: 2) - Crystal Structure of Arabidopsis Thaliana Cosy
  21. 8dqp (Ca: 2) - Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin
  22. 8dqq (Ca: 2) - Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin
  23. 8dqr (Ca: 1) - Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin
  24. 8dt6 (Ca: 9) - Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis
    Other atoms: Na (2); Cl (2);
  25. 8dta (Ca: 1) - Metal Sensitive Gfp (Msegfp) Complexed with Phenylarsine Oxide.
    Other atoms: As (1);
  26. 8dvl (Ca: 3) - Crystal Structure of LRP6 E3E4 in Complex with Disulfide Constrained Peptide E3.18
  27. 8dvm (Ca: 3) - Crystal Structure of LRP6 E3E4 in Complex with Disulfide Constrained Peptide E3.6
  28. 8dvn (Ca: 4) - Crystal Structure of LRP6 E3E4 in Complex with Disulfide Constrained Peptide E3.10
  29. 8dvp (Ca: 3) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with Substrate Purine
    Other atoms: Fe (8);
  30. 8dvy (Ca: 3) - Dna Glycosylase Muty Variant N146S in Complex with Dna Containing D(8- Oxo-G) Paired with An Enzyme-Generated Abasic Site Product (Ap) and Crystalized with Calcium Acetate
    Other atoms: Fe (4);
  31. 8dw7 (Ca: 2) - Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
    Other atoms: Fe (8);
  32. 8dwd (Ca: 2) - Adenine Glycosylase Muty Variant E43S in Complex with Dna Containing D(8-Oxo-G) Paired with An Ap Site Generated By the Enzyme Acting on Purine
    Other atoms: Fe (8);
  33. 8dwe (Ca: 4) - Adenine Glycosylase Muty Variant E43Q in Complex with Dna Containing D(8-Oxo-G) Paired with Substrate Purine
    Other atoms: Fe (8);
  34. 8dwf (Ca: 4) - Glycosylase Muty Variant E43S in Complex with Dna Containing D(8-Oxo- G) Paired with Substrate Adenine
    Other atoms: Fe (8);
  35. 8dy5 (Ca: 1) - Crystal Structure of Spfv CAT2200 Lh in Complex with Il-17A
    Other atoms: Mg (1); Cl (1);
  36. 8dzo (Ca: 5) - Crystal Structure of Human SAR1T39N Mutant
    Other atoms: Mg (1);
  37. 8dzt (Ca: 4) - Crystal Structure of Human SAR1AH79G Mutant
    Other atoms: Mg (2);
  38. 8e0e (Ca: 1) - NBF3:Cav Beta Subunit 2A Complex
    Other atoms: Mg (1);
  39. 8e4l (Ca: 4) - The Open State Mouse TRPM8 Structure in Complex with the Cooling Agonist C3, Aitc, and Pi(4,5)P2
  40. 8e4m (Ca: 4) - The Intermediate C2-State Mouse TRPM8 Structure in Complex with the Cooling Agonist C3 and Pi(4,5)P2
Page generated: Thu Jul 10 03:55:33 2025

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