Calcium in PDB, part 347 (files: 13841-13880),
PDB 8dfr-8e56
Experimental structures of coordination spheres of Calcium (Ca) in bioorganic
molecules from X-Ray and NMR experiments. Coordination spheres were calculated with 5.0 Angstroms radius
around Calcium atoms. PDB files: 13841-13880 (PDB 8dfr-8e56).
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8dfr (Ca: 1) - Refined Crystal Structures of Chicken Liver Dihydrofolate Reductase. 3 Angstroms Apo-Enzyme and 1.7 Angstroms Nadph Holo-Enzyme Complex
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8dfv (Ca: 10) - Structural Basis of Microrna Biogenesis By Dicer-1 and Its Partner Protein Loqs-Pb - Complex Iia
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8dge (Ca: 4) - BOGH13ASUS From Bacteroides Ovatus
Other atoms:
Mn (4);
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8dh6 (Ca: 1) - Cryo-Em Structure of Saccharomyces Cerevisiae Cytochrome C Oxidase (Complex IV) Extracted in Lipid Nanodiscs
Other atoms:
Fe (2);
Zn (1);
Cu (2);
Mg (1);
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8dhl (Ca: 4) - Tannerella Forsythia Beta-Glucuronidase (L2)
Other atoms:
Na (2);
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8diq (Ca: 2) - Tubulin-RB3_SLD-Ttl in Complex with SB226
Other atoms:
Mg (5);
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8dj2 (Ca: 3) - Intramolecular Ester Bond-Containing Repeat Domain From Chlamydia Trachomatis Adhesin
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8djf (Ca: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Tetrahedral Intermediate
Other atoms:
Na (1);
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8djz (Ca: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound Product
Other atoms:
Na (1);
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8dk0 (Ca: 1) - Crystal Structure of RPA3624, A Beta-Propeller Lactonase From Rhodopseudomonas Palustris, with Active-Site Bound (S)Gamma- Valerolactone
Other atoms:
Na (1);
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8dl1 (Ca: 4) - BOGH13ASUS-E523Q From Bacteroides Ovatus Bound to Maltoheptaose
Other atoms:
Mn (4);
Cl (1);
Na (1);
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8dl2 (Ca: 4) - BOGH13ASUS From Bacteroides Ovatus Bound to Acarbose
Other atoms:
Mn (4);
Cl (1);
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8dl6 (Ca: 1) - Cryo-Em Structure of Human Ferroportin/SLC40 Bound to CA2+ in Nanodisc
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8dmk (Ca: 1) - Cryo-Em Reveals the Molecular Basis of Laminin Polymerization and Ln- Lamininopathies
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8dml (Ca: 4) - Vibrio Parahaemolyticus Vtra/Vtrc Complex Bound to the Bile Salt Chenodeoxycholate
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8dos (Ca: 2) - Crystal Structure of Ferredoxin (Flavodoxin):Nadp(+) Oxidoreductase From Klebsiella Pneumoniae
Other atoms:
Mg (1);
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8dq6 (Ca: 6) - Structure of A. Thaliana Mif/D-Dt-Like Protein-1 (MDL1)
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8dqo (Ca: 2) - Crystal Structure of Arabidopsis Thaliana Cosy
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8dqp (Ca: 2) - Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin
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8dqq (Ca: 2) - Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin
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8dqr (Ca: 1) - Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin
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8dt6 (Ca: 9) - Crystal Structure of Dna Polymerase III Beta Subunit From Elizabethkingia Anophelis
Other atoms:
Na (2);
Cl (2);
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8dta (Ca: 1) - Metal Sensitive Gfp (Msegfp) Complexed with Phenylarsine Oxide.
Other atoms:
As (1);
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8dvl (Ca: 3) - Crystal Structure of LRP6 E3E4 in Complex with Disulfide Constrained Peptide E3.18
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8dvm (Ca: 3) - Crystal Structure of LRP6 E3E4 in Complex with Disulfide Constrained Peptide E3.6
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8dvn (Ca: 4) - Crystal Structure of LRP6 E3E4 in Complex with Disulfide Constrained Peptide E3.10
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8dvp (Ca: 3) - Glycosylase Muty Variant N146S in Complex with Dna Containing D(8-Oxo- G) Paired with Substrate Purine
Other atoms:
Fe (8);
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8dvy (Ca: 3) - Dna Glycosylase Muty Variant N146S in Complex with Dna Containing D(8- Oxo-G) Paired with An Enzyme-Generated Abasic Site Product (Ap) and Crystalized with Calcium Acetate
Other atoms:
Fe (4);
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8dw7 (Ca: 2) - Dna Glycosylase Muty Variant N146S in Complex with Dna Containing the Transition State Analog 1N Paired with D(8-Oxo-G)
Other atoms:
Fe (8);
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8dwd (Ca: 2) - Adenine Glycosylase Muty Variant E43S in Complex with Dna Containing D(8-Oxo-G) Paired with An Ap Site Generated By the Enzyme Acting on Purine
Other atoms:
Fe (8);
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8dwe (Ca: 4) - Adenine Glycosylase Muty Variant E43Q in Complex with Dna Containing D(8-Oxo-G) Paired with Substrate Purine
Other atoms:
Fe (8);
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8dwf (Ca: 4) - Glycosylase Muty Variant E43S in Complex with Dna Containing D(8-Oxo- G) Paired with Substrate Adenine
Other atoms:
Fe (8);
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8dy5 (Ca: 1) - Crystal Structure of Spfv CAT2200 Lh in Complex with Il-17A
Other atoms:
Mg (1);
Cl (1);
-
8dzo (Ca: 5) - Crystal Structure of Human SAR1T39N Mutant
Other atoms:
Mg (1);
-
8dzt (Ca: 4) - Crystal Structure of Human SAR1AH79G Mutant
Other atoms:
Mg (2);
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8e0e (Ca: 1) - NBF3:Cav Beta Subunit 2A Complex
Other atoms:
Mg (1);
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8e4l (Ca: 4) - The Open State Mouse TRPM8 Structure in Complex with the Cooling Agonist C3, Aitc, and Pi(4,5)P2
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8e4m (Ca: 4) - The Intermediate C2-State Mouse TRPM8 Structure in Complex with the Cooling Agonist C3 and Pi(4,5)P2
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8e51 (Ca: 13) - Crystal Structure of Iridescent Shark Catfish Cadherin-23 EC1-2 and Protocadherin-15 EC1-2
Other atoms:
K (2);
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8e56 (Ca: 2) - Rabbit L-Type Voltage-Gated Calcium Channel CAV1.1 in the Presence of Amiodarone at 2.8 Angstrom Resolution
Other atoms:
I (2);
Page generated: Mon Dec 15 09:33:37 2025
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