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Calcium in PDB 8dqr: Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin, PDB code: 8dqr was solved by C.Y.Kim, A.J.Mitchell, M.Gutierrez, J.K.Weng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.50 / 2.26
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 58.514, 88.886, 96.901, 90, 90, 90
R / Rfree (%) 19.1 / 29.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin (pdb code 8dqr). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin, PDB code: 8dqr:

Calcium binding site 1 out of 1 in 8dqr

Go back to Calcium Binding Sites List in 8dqr
Calcium binding site 1 out of 1 in the Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Scopoletin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca503

b:48.2
occ:1.00
O A:HOH662 2.0 51.0 1.0
O A:LEU214 2.2 36.5 1.0
O A:ARG211 2.2 44.4 1.0
O A:HOH736 2.4 44.3 1.0
O A:HOH737 2.5 53.9 1.0
C A:ARG211 3.5 48.0 1.0
C A:LEU214 3.5 41.2 1.0
CA A:ARG211 4.3 45.0 1.0
N A:LEU214 4.3 45.5 1.0
N A:SER215 4.4 42.3 1.0
N A:ASP212 4.5 47.1 1.0
CA A:LEU214 4.5 44.6 1.0
CA A:ASP212 4.5 45.0 1.0
CA A:SER215 4.6 44.6 1.0
C A:ASP212 4.6 39.9 1.0
CB A:ARG211 4.6 45.1 1.0
N A:PHE213 4.9 41.3 1.0
O A:ASP212 4.9 48.9 1.0

Reference:

C.Y.Kim, A.J.Mitchell, M.Gutierrez, J.K.Weng. Crystal Structure of Arabidopsis Thaliana Cosy in Complex with Coenzyme A To Be Published.
Page generated: Thu Jul 10 03:59:21 2025

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