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Calcium in PDB 8dqo: Crystal Structure of Arabidopsis Thaliana Cosy

Protein crystallography data

The structure of Crystal Structure of Arabidopsis Thaliana Cosy, PDB code: 8dqo was solved by C.Y.Kim, A.J.Mitchell, M.Gutierrez, J.K.Weng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.76 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.411, 57.903, 270.395, 90, 90, 90
R / Rfree (%) 19 / 23

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Arabidopsis Thaliana Cosy (pdb code 8dqo). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Arabidopsis Thaliana Cosy, PDB code: 8dqo:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 8dqo

Go back to Calcium Binding Sites List in 8dqo
Calcium binding site 1 out of 2 in the Crystal Structure of Arabidopsis Thaliana Cosy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Arabidopsis Thaliana Cosy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca501

b:16.2
occ:1.00
O A:ARG211 2.3 18.6 1.0
O A:LEU214 2.3 17.2 1.0
O A:HOH786 2.3 32.6 1.0
C A:ARG211 3.5 19.2 1.0
C A:LEU214 3.5 18.4 1.0
N A:LEU214 4.3 18.7 1.0
CA A:ARG211 4.3 18.4 1.0
N A:SER215 4.3 17.5 1.0
CA A:SER215 4.3 18.8 1.0
N A:ASP212 4.5 19.4 1.0
CA A:LEU214 4.5 18.0 1.0
C A:ASP212 4.5 20.2 1.0
CA A:ASP212 4.5 20.9 1.0
O A:ASP212 4.6 21.6 1.0
CB A:SER215 4.6 19.7 1.0
O A:HOH816 4.6 47.3 1.0
CB A:ARG211 4.8 18.7 1.0
N A:PHE213 5.0 19.1 0.5
N A:PHE213 5.0 19.8 0.5

Calcium binding site 2 out of 2 in 8dqo

Go back to Calcium Binding Sites List in 8dqo
Calcium binding site 2 out of 2 in the Crystal Structure of Arabidopsis Thaliana Cosy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Arabidopsis Thaliana Cosy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca501

b:28.5
occ:1.00
O B:ARG211 2.3 32.0 1.0
O B:LEU214 2.4 32.8 1.0
O B:HOH689 2.4 36.2 1.0
C B:ARG211 3.5 32.2 1.0
C B:LEU214 3.5 32.0 1.0
N B:LEU214 4.2 30.6 1.0
CA B:ARG211 4.2 32.4 1.0
N B:SER215 4.3 33.1 1.0
CA B:SER215 4.3 34.3 1.0
N B:ASP212 4.4 32.4 1.0
C B:ASP212 4.5 32.3 1.0
CA B:LEU214 4.5 31.0 1.0
CA B:ASP212 4.5 33.3 1.0
O B:ASP212 4.6 31.8 1.0
CB B:SER215 4.6 36.0 1.0
CB B:ARG211 4.7 33.7 1.0
N B:PHE213 4.9 31.4 1.0
C B:PHE213 4.9 30.5 1.0

Reference:

C.Y.Kim, A.J.Mitchell, M.Gutierrez, J.K.Weng. Crystal Structure of Arabidopsis Thaliana Cosy To Be Published.
Page generated: Thu Jul 10 03:58:57 2025

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